Prochlorococcus marinus MIT 9215: P9215_17531
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Entry
P9215_17531 CDS
T00598
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmh
Prochlorococcus marinus MIT 9215
Pathway
pmh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9215_17531 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmh03021
]
P9215_17531 (rpoC1)
03400 DNA repair and recombination proteins [BR:
pmh03400
]
P9215_17531 (rpoC1)
Enzymes [BR:
pmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9215_17531 (rpoC1)
Transcription machinery [BR:
pmh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9215_17531 (rpoC1)
DNA repair and recombination proteins [BR:
pmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9215_17531 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Pkinase_fungal
Motif
Other DBs
NCBI-ProteinID:
ABV51366
UniProt:
A8G6Y5
LinkDB
All DBs
Position
complement(1497609..1499513)
Genome browser
AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKISIASPQRIMDWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVSHVWY
LKGIPSYVAILLDIPLRDVEQIVYFNCYVVLDPGDHKELKYKQLLTEDEWLEIEDEIYAE
DSIIENEPIVGIGAEALKQLLEDLDLNQVAEELREEITNSKGQKRAKLIKRIRVIDNFIA
TNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQKADDEVM
QVLQEVIDGHPILLNRAPTLHRLGIQAFEPKLVGGRAIQLHPLVCPAFNADFDGDQMAVH
VPLALEAQTEARMLMLASNNILSPATGEPIVTPSQDMVLGSYYLTALQPNYQKPEFGDNK
TTFASLEDVIFAFEDKRLSLHEWVWVRFNGEVEDEDEMRSPQKTQELEDGSKLEIWNLRR
DRFDSDNNLISRFVLTTVGRVVMNYTIIDSVSKT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacagcaacttaagaactgaaaatcactttgattacgtcaaaatttcaatagct
tctccacaaagaataatggattggggtcagaggacattgcccaatggacaagtagttggt
gaagttacgaaaccagagactattaactacaggacacttaaaccggaaatggatggattg
ttttgcgaaaagatttttgggccatctaaagattgggaatgtcattgtggaaaatataaa
agggtaagacatcgcggcattgtttgtgagagatgtggggttgaagtaactgaaagtaga
gttagaagacataggatgggttatataaaactagctgcgccagtttcccatgtttggtat
ttgaaaggaatccctagttacgttgcaatccttttggatattcctcttagggatgtagag
caaatagtttattttaattgttatgttgttttagaccctggtgatcataaagaacttaaa
tataagcaattactcactgaggatgagtggctagaaattgaagatgaaatttatgctgaa
gattcaattatcgaaaatgaacctattgttgggattggtgccgaggcactgaagcaatta
cttgaggatcttgatttaaatcaggttgctgaggagcttagagaagaaattactaatagc
aaagggcaaaagagggcaaaacttattaaaaggataagagttattgataatttcattgca
actaatgcaaaaccagaatggatggtattagatgcaatcccagttataccccctgatttg
agacctatggttcagcttgatgggggaagattcgcaacttctgatttaaacgatctatac
agaagagttataaatagaaacaatagactagctaggcttcaagaaattttagcccctgaa
attatcgtaagaaatgagaaaagaatgcttcaggaggcagttgatgctcttatagataat
ggaaggagaggtaggactgttgttggagcaaataatagagctcttaagtccctaagtgac
ataattgaagggaaacaaggaagatttagacagaatctccttggaaagcgtgttgactat
tcaggaagatctgtaatagttgtaggtccaaaattaaaaatgcatcagtgcgggctccca
aaagaaatggcgatagagctctttcaacctttcgtaatacatagattaatacgacaaaat
attgtaaataatattaaagctgcaaaaaaattaatacaaaaagccgatgacgaagttatg
caggtacttcaggaagttattgatgggcatccaattctattgaatagagcccctacgctg
catcgtttaggaattcaagcttttgaaccaaaattagttggaggtagagcaatacaactt
catcctttagtttgtcctgcattcaatgctgacttcgatggtgatcaaatggcagttcat
gtccctctagctttagaggcacaaactgaagcacgtatgcttatgttggccagtaataat
attctttcccctgctactggggaaccaatcgttactccatcacaagatatggttttggga
tcttattatctgaccgctttgcaaccgaattatcaaaaaccagaattcggagataataag
actactttcgcttcattagaagatgtcatttttgcttttgaagataaaaggctgagccta
catgaatgggtttgggttagatttaatggagaagttgaggatgaagacgaaatgcgtagt
ccacaaaaaactcaagagctagaggatggctcaaaattagagatctggaatttaagaaga
gacagatttgactctgataataatttaattagtagatttgtgttgacaactgttgggaga
gtggttatgaactacaccatcattgattctgtatctaaaacgtaa
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