Prochlorococcus marinus MIT 9312: PMT9312_0306
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Entry
PMT9312_0306 CDS
T00297
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmi
Prochlorococcus marinus MIT 9312
Pathway
pmi03420
Nucleotide excision repair
pmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMT9312_0306
03430 Mismatch repair
PMT9312_0306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmi03400
]
PMT9312_0306
Enzymes [BR:
pmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMT9312_0306
DNA repair and recombination proteins [BR:
pmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMT9312_0306
MMR (mismatch excision repair)
Other MMR factors
PMT9312_0306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
ResIII
DEAD
Sec3-PIP2_bind
Motif
Other DBs
NCBI-ProteinID:
ABB49367
UniProt:
Q31CM8
LinkDB
All DBs
Position
complement(291366..293774)
Genome browser
AA seq
802 aa
AA seq
DB search
MPQTNNFLFKSLNKQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNIL
AVTFTNKAAKEMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQERLQNLWIGT
FHSLFSRLLRYDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQDMNLDPKRYDPKKI
KRLISNAKNQCLTSNDLLEKADNNFDKTVAEAYRRYRISLSKNNSLDFDDLLLLPVFLLR
QNDMVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDAD
QSIYSFRAADFRILIGFQEDFKTSINDDTKSSLIKLEENYRSSSNILDAANSLIENNSER
IDKVLKATKEKGELLTLLSCDDEISEAEAITNKIKSLNNYNQNPIWKNFAILYRTRAQSR
VLEESLVRWRIPYTIFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKT
TIQKLNELSNRLNIPLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLL
QLILEKSGYLSDLLSNGTEESEDRRNNLQELINAATQYEEETESGDVEGFLSTAALTTDN
DTKKNNPNSVTLMTLHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSLLEEERRLCYVGIT
RAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLMDGELPQTGGASIRRDWHLERLT
RVDRNNPNEFVNKPINAVRKLYSGPSKGKSWIVGDKLIHSKFGKGEIIHIFGSGEKISLA
VKFGDKGSKILDPRLAPIRYVS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
gtgcctcaaaccaacaatttcctttttaagtccctaaacaaacaacaacttcaagcagta
aaacatgtttatggaccactattagttgtagcaggtgcaggtagcggaaaaactaaggct
cttactcacagaattgcaaaccttatagagggtaactctatagatccctataacattctg
gcagtcactttcactaacaaagctgctaaagaaatgaaagcaagattagaggttcttcta
gcccaagaattagcttttaatcaatttggtcagccttggacaactctcaaagaaattgat
caaaatcaattaagaacaaacgttcaccaagagaggcttcagaacctttggatcggtact
ttccattctttattttcaagacttctgagatacgatattgaaaaatatactgatccagaa
ggcctaaaatggacgaggcaattttcaatttacgatgaaacagattctcaaacattagta
aaagaaattatcagtcaagatatgaatcttgacccaaaaagatatgatcccaaaaagatt
aaaagattaataagtaatgctaaaaatcaatgcttaacttctaatgatcttttagaaaaa
gcagataataattttgataaaacagttgcagaagcctacaggagatatagaatttcgctt
tcaaaaaataattctttagattttgatgatcttctacttttgcctgttttcttattaaga
caaaatgatatggtcagagattactggcacaaaagatttaaacatattttagttgacgaa
tatcaagatacaaatagaacacaatatgaacttataaaattaattacggctggaaatact
gaaccaaaaaaattcttcaattgggaagatcggtcaatttttgtagttggggatgctgat
caaagtatttatagtttcagagcagctgacttcagaattttaattggttttcaagaagat
tttaaaacttcaatcaacgacgatacaaaatcatctttaattaaattagaagaaaattat
aggtcatcttctaatatccttgatgctgcaaactcactaattgaaaacaactctgaaaga
attgacaaagttttaaaggctactaaagaaaaaggggaacttttaacgttactcagctgt
gatgatgaaatttccgaggcagaagcaattaccaataaaataaaatcactcaataactat
aatcaaaacccaatttggaaaaattttgcaattttatatcgaaccagggctcagtcaaga
gtattagaagaatctcttgtaaggtggcgcattccttatacaatttttggaggattgcgt
ttttatgatagaagagaaattaaagatgcaatagcatatttgaaagttctggttaattct
tcagataacgttagtcttttgcgaatcataaatgttcctagaagagggattggtaagact
actattcaaaaacttaatgaattatctaataggttaaatatcccattatgggaggttctt
aatgataagcaaagtcttgaagaaacaataggccgatcatcaaaaggaattaataaattt
actgaagttatgaatgatctactgtgttacctagaaaattcaggccccgctcaactacta
caacttatattagaaaaaagtggttatttaagtgacttgctctctaatgggactgaagaa
tctgaagatagaagaaataacttacaagaactaattaatgcagctactcaatatgaagaa
gaaacagaaagtggggatgtagagggatttctttctacagcagccttaacaactgataat
gatacgaaaaaaaataatcccaactctgtaactctcatgactctgcataatagtaaaggt
ttagaatttcaaaatgtttttatcactgggctagaacaaggtctcttccctagccataga
tcaatagatactccctcacttcttgaagaggaaagaagattatgctatgtaggtattact
agagctaaagaaagagttttcttaagtcatgctagagaaagaagattatggggtggaatg
cgtgaagcaacaattccttcaatatttctttcagaaatacctgaagatttaatggatggc
gaattaccacaaactggtggtgcttcaattagaagagattggcatcttgaacgtttaact
agagttgatcgaaacaatccaaatgaatttgttaacaaaccaataaatgcagtaaggaaa
ttatattcaggtcccagtaaagggaaaagctggatagttggagataagctaattcactca
aagtttgggaaaggtgaaatcatacatatttttgggagtggggaaaaaatatctttagca
gtaaaatttggtgataaaggaagtaaaattctagatcccagattagctccaattcgttat
gtaagttaa
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