Prochlorococcus marinus MIT 9312: PMT9312_0334
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Entry
PMT9312_0334 CDS
T00297
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pmi
Prochlorococcus marinus MIT 9312
Pathway
pmi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PMT9312_0334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmi03400
]
PMT9312_0334
Enzymes [BR:
pmi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PMT9312_0334
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PMT9312_0334
DNA repair and recombination proteins [BR:
pmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PMT9312_0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
YhfH
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABB49395
UniProt:
Q31CK0
LinkDB
All DBs
Position
complement(322684..323565)
Genome browser
AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLEQKLNNFIIKKVEVCRNSTVAFPTEKEEFIKGLQNSLLYKWDRRGK
YLIAELKKIENENIKFPLKKLRQNNGFLVVHLRMTGYFKFIDNSTQPCKHTRIRVFDKKN
NELRYIDVRSFGQMWWIKEGLSPNKIIKGLGSLGPEPFSKNFDEKYLKKVISKRKKSIKA
ILLDQTIVAGIGNIYADESLYSAGISPFRAAKTIKKNELINLKESIVNVLKKSIGSGGTT
FSDFRDLEGENGNFGLQTNVYRRTGKECRKCGNLIEKQKIAGRSTHWCPNCQK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgaattacctgaagtagagactgttcgcagaggtttagagcaaaaacttaataac
tttattattaaaaaagttgaagtctgtaggaattcaactgtggctttccctactgaaaaa
gaagaatttattaagggactacaaaactcacttttatacaaatgggatagaagaggaaaa
tatttaatagctgaactaaaaaaaattgaaaatgaaaatattaaatttcctcttaaaaaa
ttgaggcaaaataatggatttcttgtagttcatttaagaatgacgggatatttcaaattt
attgataactctactcagccttgtaaacatacaagaataagagttttcgataaaaaaaat
aatgagctcaggtacattgacgtaagaagttttggtcaaatgtggtggattaaggaaggg
ttatcgcctaataaaataatcaaaggattaggttcattaggaccagaaccattctccaag
aactttgatgaaaaataccttaagaaagttatttccaaaagaaaaaaatctataaaagcc
atcttattagatcaaacaatagtggcaggtataggtaatatttatgccgatgaaagtttg
tattcggctggcatctcaccttttagggcggctaaaacaataaagaaaaatgaattaatt
aatctcaaagaatcaattgttaatgtattaaaaaaaagtataggttcgggggggacaacc
tttagtgattttagagacttggaaggggagaatggaaattttggtttacaaacaaatgtc
tatagaagaactggtaaagaatgtcgcaaatgtgggaatttaattgaaaagcaaaaaatt
gctggacgaagtactcattggtgtccaaattgccaaaagtaa
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