Prochlorococcus marinus MIT 9312: PMT9312_1112
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Entry
PMT9312_1112 CDS
T00297
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmi
Prochlorococcus marinus MIT 9312
Pathway
pmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMT9312_1112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmi03019
]
PMT9312_1112
03009 Ribosome biogenesis [BR:
pmi03009
]
PMT9312_1112
Enzymes [BR:
pmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMT9312_1112
Messenger RNA biogenesis [BR:
pmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMT9312_1112
Ribosome biogenesis [BR:
pmi03009
]
Prokaryotic type
rRNA helicases
PMT9312_1112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_22
Cas3-like_C_2
UvrD-helicase
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABB50171
UniProt:
Q31AC4
LinkDB
All DBs
Position
complement(1024361..1026142)
Genome browser
AA seq
593 aa
AA seq
DB search
MALKKDGNSVDNGQEKSQHDDASLLEIKNLENKTDIKSQPLEISIGNDNENGFLDFGFNQ
SILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNKELN
AKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKVDVVVGTPG
RIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSATMPNEI
RNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVIIFVRTK
LLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARGLDVERIK
LVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENSTRTKIEEINIPS
NKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDDSNIAMAAINLVI
GNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSNRRNNFQNDSFETYKFDFGKFDGV
RVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRDLHRETKNKLKKIKVRN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggctttaaaaaaagatggcaactcagttgataatgggcaggaaaaatctcagcatgat
gacgcgtcccttctcgagataaagaacttagaaaacaaaacagatattaaatctcaacca
ttggaaatatcaataggaaatgataatgagaatgggtttctcgattttgggtttaatcaa
tcgatcttaaattcgttaagcaataaaggatataaaaatccaactcctatccaaaaagct
gcaattccggaactaatgttaggcagagatttattaggccaagctcaaactggaacagga
aagactgcagctttcgcattaccattaatagaaaaacttgcagataataaagaattaaat
gccaaggttttagttatgacccctactagagagttggcaactcaagttgcagaatctttt
aaaagttatagttctgaatctactaattttaagacaattgcaatatatggaggcaccgac
tatcgaaatcaaatttatgcgttaaaaagaaaagttgacgtagtagttggaacccctggc
cgaataatggatcatataaggcagggaacctttaaagttaatagcataaattgtcttgtt
ttagatgaggccgatgaaatgttaaatatgggttttcttgaagatattgaatggataata
gatcaactacctaaaaataagcagatggtattgttttcagcaacaatgcctaatgagatt
agaaacatagcaaaaaaatatctaaatgatcccgccgaaatattaatcaaaagtgtcaaa
aaagaaacccaattaatttcgcaaaaatttctttacgtccaaaggcatcataaattagat
gctttaaaaagaatattagaacttaataacgagggagtaataatttttgtaaggacaaaa
ctacttactacttcaatagcagaagctttagaaaatttaggtcatagtgtggcagtgctt
aatggagatattcctcaaaatcaaagagaaaatactgtagatagattaaaaaaaggattt
attgatattcttgttgcaactgatgttgcagctagaggattagatgtagagaggataaaa
ctagttgttaattacgattttccttttgataaggaaacatatactcatagaattggaagg
actggaagggcaggcagatccggagaggcaattttattcgttaatcatagagaaaaacat
tttctaagaaacttagaaaactcaacaagaactaagattgaagaaattaatataccaagc
aataaaataataaatgaaaaaaggatggagaaacttatagagaacgttaatgagagttct
ttagctaaagaagataatgaagaaaataaagctttgattattgatgtactagataattta
aaagaaaaacactctatggatgactcaaatattgcaatggctgcgattaatttagtaata
ggtaataaagcattttttgttaatgaagatgattcttggattcataaacaaaataatact
gatagaaatagatcaaatagaaatggtaataatcgtatgagaaattcaaatagaagaaat
aattttcaaaatgattcttttgaaacctacaaatttgactttggtaaatttgatggtgtt
agagtagcaaatattatatcctcaatctgtaattcaactaatataaatggtagatccata
ggtaagatacagatttttaatgattatagtttggttgatttacctagagatctgcataga
gaaactaaaaataaattaaaaaaaattaaagtaagaaactaa
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