Proteus mirabilis BB2000: BB2000_2508
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Entry
BB2000_2508 CDS
T02789
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmib
Proteus mirabilis BB2000
Pathway
pmib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmib00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BB2000_2508 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmib03021
]
BB2000_2508 (rpoD)
Transcription machinery [BR:
pmib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BB2000_2508 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DUF1931
BUD22
CDC45
Motif
Other DBs
NCBI-ProteinID:
AGS60964
LinkDB
All DBs
Position
2725708..2727564
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AA seq
618 aa
AA seq
DB search
MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENSNDTDDDAVEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITAFIDPNAEEVAESDD
VNLGKDDDEIDNSADDEDEDEDEDSDTDSDSDDDNSIDPELARQKFTELREQYEKTRQSI
KAKGRNHKDTELEILQLSEIFKQFRLVPKQFDYLVNNMREMMDRVRAQERHIMRLCVDQV
KMPKKNFITLFTGNETNDTWFTAARAMNKPWSEKLAGIEEEVQRSLQKLQQIEVETGLTI
EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA
TSESLRSATHEVLGGLTLREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEVLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgttacgaaaggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccagatgattaacgacatgggcattcaggtcatggaagaagcacct
gatgccgatgatctgatgttggcagaaaattcaaatgacactgatgatgatgctgtcgaa
gccgctgctcaggtactttctagtgtagaatctgaaattggccgtacaaccgatcctgtg
cgtatgtatatgcgcgaaatgggaaccgttgaactgctcacccgggaaggtgaaattgat
atcgcaaaacgcattgaagatggtattaaccaagttcaatgctcagttgctgaatatcct
gaagcaatcacttatcttcttgaacaatatgatcgtgttgaagccggtgaagcgcgtctt
tctgatttaattactgcctttattgaccctaatgccgaagaagtggcagagagtgatgat
gtcaatttaggcaaagacgacgatgaaatcgacaacagcgccgatgacgaagatgaagac
gaagatgaagatagcgacacagacagcgatagcgatgatgataacagcatcgatcctgaa
cttgctcgccaaaaattcaccgagcttcgtgaacagtacgaaaaaacgcgtcaatctatt
aaggccaaaggtcgtaatcataaagataccgaactggaaattttacagttatcagaaatt
ttcaaacagttccgcttagtgccaaaacagtttgattatctggttaacaacatgcgtgaa
atgatggacagagtccgtgctcaagagcgtcacatcatgcgtctttgtgttgatcaggtc
aaaatgcctaagaaaaacttcattactctgtttacaggaaatgaaactaacgacacatgg
tttactgccgctcgtgcgatgaataaaccttggtctgaaaaactggcaggtattgaagaa
gaagtacaacgtagcttacaaaagttacaacaaattgaagttgaaacaggactgacaatc
gaacaggttaaagatattaaccgtcgtatgtctatcggtgaagcaaaagcacgccgtgcg
aaaaaagagatggtcgaagcgaacttacgtttagttatctctatcgcgaaaaaatatacc
aaccgtggcttacagttccttgacctgatccaggaagggaatattggtctaatgaaagcg
gttgataaatttgaatatcgtcgtggttataagttctcaacttatgcaacatggtggatc
cgtcaggctattactcgttcaatcgccgatcaggcacgtaccattcgtattccggtacat
atgattgaaacgattaataagctaaaccgtatctcacgccaaatgttgcaagagatggga
cgtgagccttcaccagaagagcttgcagaacgtatgttaatgcctgaagataaaatccgt
aaggtactaaaaatcgctaaagagcctatctccatggaaaccccaattggtgacgatgaa
gattcacatttaggtgattttatcgaggatactaccctcgaattacctctggattcagca
acatcagaaagcttacgttcagcgacacacgaagtattaggtggtttaacactgcgtgaa
gctaaagtcctgcgtatgcgctttggtatcgatatgaataccgaccatacattggaagaa
gtgggtaaacaatttgatgttacccgtgaacgtatccgtcagattgaagcaaaagcgttg
cgtaaattacgccacccaagccgttctgaagtgctacgtagcttccttgatgaataa
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