Parvimonas micra: NW74_04540
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Entry
NW74_04540 CDS
T03515
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmic
Parvimonas micra
Pathway
pmic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NW74_04540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmic03400
]
NW74_04540
Enzymes [BR:
pmic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NW74_04540
DNA repair and recombination proteins [BR:
pmic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NW74_04540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIZ36653
UniProt:
A0A0B4S1M9
LinkDB
All DBs
Position
complement(973923..977429)
Genome browser
AA seq
1168 aa
AA seq
DB search
MNFLIDFLKNNESYLDMISGLKSNNVPIYCNGLIKESLFHLIYSIFNDLPDKNLVLLVEN
ENRANELCDELKSLVGDKVVVYPNFEIRFHNINSLETNLENIRIEIMNRLLSKEKFIIIT
TASALSKKISTPKFFKSHYIYIDENLEVNLKELTENLIKMHYDRVDFVEAKGQFSIRGSI
FDIFPVNFKNPIRIELFGDDIDSIRIFDINSQRSVEKLNKVEIIPAKEMVLSKSDVENIL
NGLNKDIEKLQKLKLFGKDIEKSTEKFYQIYNDLKINYHISNMDLISPYIRKGSYSTLLD
YLAQDSIICTEDILKIYDRNLEIENLFHENVVFSIENAEILDSHKDILIPFEHILRRIKD
FSIINFTQLLKRTKIINPKSIINLKTIEAEIFNRKFDLLFQNLKSKLQRGYKIVIFAGSL
EKANNLKEILYAENINSNIFEGLEFKLKSSILGISTLNLESGFEYPIQKVLFLTHKEIYG
TVKKTSKKTRKKSKENLLDYTDLNVGDFVVHENHGIGEYRGIEQIEVDGIVKDHILILYK
GNDKLYIPTDQMNLIQKYIGKDGYKPKLNKLGSNDWIKTKTRAKKVLDEIAIDLVQLYAK
RDKIKGFAFSEDTTWQKEFEDSFIYEETYSQLRAINEIKKDMEQFKPMDRLLCGDVGYGK
TEVALRAAFKAMMDDKQVAFLVPTTILAQQHYNTAIDRVGNFPVEIEMLSRFRSPAKQKE
ILKNVKNGKVNLLIGTHKLLSKNLEFKDLGLLIIDEEQRFGVKHKETLKKIKENIDVLSL
SATPIPRTMQMSLVGIRDMSILDDPPEERVTIATFVLEYNDSIIREAIYKEIDRGGQVYF
VYNRIHDMDKMYVELSRLVPDAKIAMAHSKLSNKELENIMYDFQEGEYDILLCTTIIETG
MDIKNCNTMIIYDADKMGLSQLYQLKGRIGRSTRRAYAYFTYEKDKVLTEISEKRLMAIR
DFSEFGSGFKIAMRDLELRGAGNILGECQSGHIETIGYEMYVRMLEESIKTVKGENLQIK
DQTTIELSVDAYIPSNYIVDNNQKIDMYRKIAAISSRDDFDEIYDELTDRFGNVPTTVLN
VMNVSYLKTISTELNFIRIIDREKSVVFKFEQINRDILQLIGRLSDVLFRKIEFNLNENA
ELIFNYDKDKLSESIDFVENLLFLKQKN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaattttttaattgattttttaaagaataatgaatcatatttggatatgatttcaggt
ttaaaatcaaataatgttccaatttattgtaatggacttatcaaagagagtctattccat
ttaatatattctatttttaatgatttgcccgataaaaatttagttttacttgttgaaaac
gaaaatagagctaatgaactttgtgatgaattgaaaagtttggtaggagataaagttgta
gtttatccaaattttgagataagatttcacaatatcaatagtttagaaacaaatcttgaa
aatattagaattgagataatgaatagacttctctctaaagagaaattcataataattaca
actgcaagtgctttatcaaaaaaaatcagcacaccaaaattttttaaatcacattatatt
tatattgatgaaaatttggaagtaaatcttaaagaattgacagaaaatttaattaaaatg
cattatgatagagttgacttcgttgaagcaaaaggtcaattttcaataagaggatctatt
tttgacatttttcccgtaaatttcaaaaatccgataagaatagaattgtttggagatgat
attgattccatacgtatttttgatattaacagtcaaagatccgttgaaaagttgaataag
gtggaaataatacctgcaaaagaaatggtattgtcaaaatctgatgttgaaaatatttta
aatggtttgaataaagatattgaaaagttacaaaaattaaaactgtttggaaaagatatt
gagaaatcaacagaaaaattttatcaaatttataatgatttaaagataaattaccatatt
tcaaatatggatttaatctctccctatataagaaaaggtagctattcaactcttttagat
tatttggctcaagattcaataatatgtactgaggatattttaaaaatttatgatagaaat
ttggaaatagaaaatttattccatgaaaatgtagtattttctattgagaatgctgagatt
ttagactcacataaagatattttgattccttttgaacatattttaaggagaataaaggat
tttagtataattaatttcacacaactactaaaaaggacaaaaataataaatccaaaaagt
attataaatttaaaaacaattgaagctgagatatttaatagaaaatttgatttattattt
cagaatttgaaatctaaattacaaagagggtataaaattgttatctttgcaggttcattg
gaaaaggcaaataatttaaaggaaattttatatgcagaaaatataaattccaatatattt
gaaggattagaattcaaattaaaaagttctattttaggaatttctactttaaatttagaa
tcaggttttgaatatccaattcaaaaagtactgtttttaacacataaagaaatttatgga
actgtaaaaaaaacttctaaaaaaactagaaaaaaaagcaaagagaatttacttgactac
acagatttaaatgttggagattttgtagtccatgagaatcatggaattggagaatatagg
ggaattgaacaaattgaggttgacggtattgtaaaagatcatattttaattttgtataaa
ggaaatgataaattatacattccaacagaccaaatgaatttaattcaaaaatatattggt
aaagacggatataaaccaaaattaaataaattaggttctaatgattggataaaaactaag
actcgcgctaaaaaagttttagatgaaattgcaatagatttagttcagctctatgcgaaa
agagataaaataaaaggttttgctttttcggaagatacaacttggcaaaaagaatttgaa
gatagttttatttatgaagaaacatattcacaacttagagcaatcaatgaaataaagaaa
gatatggagcagtttaaaccaatggacagattgctttgtggagatgtaggatatgggaaa
acagaagttgccttaagagctgcatttaaagcaatgatggatgataagcaagtagcattt
ctagttccaactaccatacttgctcaacagcattataatactgctatcgatagagttgga
aattttcctgttgaaattgaaatgctcagtagatttagaagtcctgcaaagcaaaaagag
attttgaaaaatgtgaaaaacggaaaagtaaatttacttataggcacacataaattattg
tcaaaaaatttggaatttaaggatttaggacttctgataatagatgaagaacaaagattt
ggtgttaaacataaagagaccttaaaaaaaataaaagaaaatattgacgtattatcttta
tctgcaacaccaattccaagaactatgcaaatgagtttagttggaattagagatatgagc
attttagatgatccgccggaagaaagagttactatcgctacatttgttttagaatataat
gattcaataattcgtgaagcaatttataaagaaatagatagaggtggacaagtttatttt
gtctataataggattcatgatatggataaaatgtatgttgaattatcaagacttgttcct
gatgctaaaattgcgatggctcatagtaaattgtctaacaaagagttagagaatataatg
tatgattttcaagaaggagaatatgatatattactatgtactacaataattgaaaccggt
atggatataaaaaattgtaatactatgattatatatgatgcagataaaatgggtttatct
caactttatcagttaaaaggacgaatcggtcgttctacaagaagagcttatgcatatttt
acttatgaaaaagataaagtcttaactgaaatttcagagaagagacttatggcaataaga
gatttttcggaatttggatctggttttaaaatagctatgagagacttagagcttagaggt
gctggaaatatcttaggggaatgtcaatccggacatatagagactatcggatatgaaatg
tatgttagaatgttggaagaaagcataaaaactgttaagggagaaaatttacaaattaaa
gatcaaactacgattgaattatcagttgatgcgtatattccttcaaattatatagtagat
aataatcagaaaattgatatgtacagaaaaattgctgcaatatcatcaagagatgacttt
gatgaaatttatgatgaacttactgatagatttggtaatgttccaacaacggtattaaat
gttatgaatgtttcatatttaaagactatttctacagagctgaattttataaggataata
gatagagagaagtctgtcgtatttaaatttgaacaaataaatagagatattttacagcta
ataggcagattatcagatgttttatttagaaaaattgaattcaatttaaatgaaaatgcg
gagttaatatttaattacgataaggataaattatcagaaagtattgattttgttgaaaat
ttgctatttttaaagcaaaaaaattaa
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