Patiria miniata (bat star): 119719890
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Entry
119719890 CDS
T11642
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmin Patiria miniata (bat star)
Pathway
pmin03013
Nucleocytoplasmic transport
pmin03015
mRNA surveillance pathway
pmin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119719890
09122 Translation
03013 Nucleocytoplasmic transport
119719890
03015 mRNA surveillance pathway
119719890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmin03019
]
119719890
03041 Spliceosome [BR:
pmin03041
]
119719890
Enzymes [BR:
pmin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119719890
Messenger RNA biogenesis [BR:
pmin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119719890
Spliceosome [BR:
pmin03041
]
Complex C
Other components
EJC/TREX
119719890
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119719890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
119719890
NCBI-ProteinID:
XP_038045285
UniProt:
A0A913Z3K1
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MAENDVEQELLDYEEEEHDATQEAGGDATTQVVAKKDVKGTYVSIHSSGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQLEPVSGQIGVL
VMCHTRELAYQIKKEYDRFSKYMKDMQDKVAVFFGGLSIQKDMQRLKTDPPHIVVGTPGR
LLALVRNKSLNLKNVKHFILDECDKMLEQLDMRKDVQEIFRSTPHEKQVMMFSATLSKEI
RPVCKKFMQDPMEVYVDDETKLTLHGLMQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFIK
SVQRCMALCLLLVEQNFPAISIHRAMQQETRLQNYKLFKDFEKRILVSTNLFGRGMDIER
VNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNITELP
EEIDMASYIEPDRFQ
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaacgacgttgagcaagagctgttggactacgaggaggaggaacatgacgcc
acgcaggaggccgggggtgatgcgaccacccaggtggtggccaaaaaagacgtgaaaggc
acgtacgtgtccatccacagctccgggttccgcgacttcttattgaagccagagttgctc
cgggccatcgtggactgtggctttgagcatccctcagaagttcaacatgagtgcattccg
caagccatcctgggcatggacgtcttgtgccaggccaagagcggtatgggcaagacagct
gtctttgttctctccactctgcagcagttggagcctgtctctggtcagattggtgtactt
gtcatgtgccacacccgcgagctggcctaccagatcaagaaagagtacgaccgcttctcc
aagtacatgaaggacatgcaggacaaagtggccgtcttcttcggcgggctgagcatccag
aaggacatgcagcggctcaagacggacccgccgcacatcgtggtgggcacgccgggccgc
ctgctggccctggtgcgcaacaagtccctcaacctcaagaacgtcaagcacttcatcctg
gacgagtgcgacaagatgctggaacagctagacatgaggaaagacgtgcaggagatcttc
cgttctacgccccacgagaagcaagtcatgatgttcagcgctacactcagcaaagagatc
cgcccagtctgcaagaagttcatgcaagaccccatggaggtgtacgtagatgacgagacc
aagttgaccctgcatggtctgatgcagtactacgtcaaactgaaggacaacgagaaaaac
cgcaagctgtttgacctgctggatgttctggaattcaaccaggtggtgatcttcatcaag
agtgtgcagcgctgcatggctctctgcctactcctggtggagcagaatttccctgccatc
agcatccatcgcgctatgcagcaggagacaaggttacaaaactacaagctgttcaaagat
ttcgagaagcgtatcttggtgtccaccaacctgtttggccgaggcatggacattgagaga
gtcaacatcgtcttcaactacgacatgcctgaaaactcggacacctaccttcacagggtt
gcccgtgctggccgttttggcaccaagggtctggccatcaccttcgtctcggacgagaac
gacgccaaaatcctgaatgacgtgcaagaccgcttcgaggtcaacatcacagaactcccc
gaagaaattgacatggcctcctacattgaacctgacagattccagtga
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