Patiria miniata (bat star): 119720272
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Entry
119720272 CDS
T11642
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pmin Patiria miniata (bat star)
Pathway
pmin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119720272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmin03019
]
119720272
Enzymes [BR:
pmin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119720272
Messenger RNA biogenesis [BR:
pmin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119720272
mRNA degradation factors
3'-5' decay
Ski complex
119720272
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
ResIII
DEXQc_Suv3
DUF3516
CCDC142
Motif
Other DBs
NCBI-GeneID:
119720272
NCBI-ProteinID:
XP_038045840
UniProt:
A0A913Z519
LinkDB
All DBs
Position
Unknown
AA seq
1285 aa
AA seq
DB search
MADDEWAELEKCRLDLTDKDSPDGLDFSLLELGSTGQVTAVPRSDPSTGPAPLSTLPNGL
PPVLQDLKVKTLQFLDRPEKLPIHDVKAAQRFWPRKADPCSLYKVPSCPVQTTLQVERHP
TTGELTGFREVQMEGTASTAKNSLSLRRQPGPPTQSVRGSSTNFPFWPGGIDEPSAETIH
ARGEDDEDIDFENDLLSMPPGLTNGMAFESKPTIVKTDTPDRSTPNETAPSKPASHILKL
TDLMIIDDGDEYAFSDKEDDDSDEYDDGDASEVGGDSRKEADEVNKEAAESLDKMLPKEM
MVTRQPKKEGAELTKEQWAVNVDISHPVSDFHRLVPAPAKEWPFQLDVFQKQAVIHLENH
DCVFVAAHTSAGKTVVAEYAIALSLKHLTKTVYTSPIKALSNQKFRDFKETFGGDVGLLT
GDVQIKTDSSCLIMTTEILRSMLYNGSDIIRDLEWVIFDEVHYINDSERGVVWEEVLIML
PAHVKIILLSATVPNTLEFADWVGRIKRKKIYVISTLKRPVPLEHFLYTGNSTKTNNELF
LIVDSTKKFLTSGYHKAVDAKKERESKASSSHGAKGPRQWPHKGDKGVYLSIIEMLRKRE
QLPVVAFTFSKKRCDENATMLTTLDLTTTNEKSEIHVFMQKCVERLKGTDRMLPQVLHMR
DLLKRGIAVHHSGILPILKEMIEMLFQRGLVKLLFATETFAMGVNMPARTVIFDSIRKFD
GTGQRTLLAGEYVQMAGRAGRRGLDTTGMVIILCKGDVPESAELHKMMLGKPTQLESQFR
LTYTMILNLLCVEELRVEDMMKRSFSESSTRKDAKEYEAKLRVIQEEMSNVQTLNCYLCH
EDLDQYYQTCKQLQGLRLELRKMIASHPLGVKALSPGRVVIVSTKEHRNALGVVLSSSTA
SKERTFKTLVLTNHADPGGAGMQNGTADPGGGHRVHVQPLRKEPLFRPEGPCGHTVLDLV
GQEIGTVTTVAIKIASDRIAEDFKKRQIPRFRDNPPSQSTSLATQELLRITEANPEGLTS
LDPVKDLHLRELDQVEKFQERDTLESLLDQFGCLNCPNFLEHFGVMCHRMKLKEDFNHLR
FLLSDQSLHLLPEYHQRIQVLRHLRHIDGANTIQLKGRVARVISNHELIITELVFQGLLT
GLPPEEIAALLSCMVFQEKRCSEPELTPSLKEGVGKIKAEAKRLAEIQHECGINLSVQDY
VEQFRFGLTQVVYEWARGMPFADITNLTDVSEGIIVRTIQRLDEVCRDVRSAARIVGDPS
LFQKMDEASQLIKRDIVFAASLYTQ
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacgaatgggcagaactggagaaatgtcgtctcgatttgacagacaaggac
agccctgatggattggacttctctctgctggagcttgggtctactggtcaggtgacagcc
gtgccgagaagcgacccaagcactggaccagcaccactctcgacgttgcccaatggcttg
ccgccagtgctccaagatctgaaagtcaagacacttcagtttctggaccgaccggagaaa
ctccccatccacgatgtcaaagcggctcaaaggttttggcctcgtaaggcagacccatgc
agtctgtacaaggtcccatcatgccctgtgcagaccactttgcaggttgaacgacacccg
acaacgggagagctgactggatttagggaggtccaaatggagggtacagcctcaacggct
aaaaactctctgtccctccgacgccaaccaggcccacccacccagtcggtgcgtggtagc
tccacaaacttccccttctggcctggtgggatagacgagccgtcggcagagaccattcac
gccaggggggaggacgacgaggacattgactttgagaatgatctcctctccatgccaccg
ggtctgaccaatggcatggcattcgagagcaagccgaccattgtcaaaacagacacaccc
gaccggtcgacgcccaacgaaacagcgccctctaagccggcgtcccacatcctgaaattg
acagacctcatgatcattgacgatggcgatgagtatgcgttctctgacaaggaggatgac
gactcggacgagtatgacgatggggacgcatcggaggtgggcggagattccagaaaagag
gcggatgaagtcaacaaggaagcagccgagagtttagacaaaatgttgccaaaggagatg
atggttaccaggcaaccaaagaaggagggggcggagctcactaaggagcagtgggcagtc
aacgtggacatctcccacccggtgagcgacttccatagactggtaccggcccctgccaaa
gagtggccgtttcagctggatgtgtttcagaagcaggcggtcatccatttggagaaccac
gactgcgtgtttgtcgccgcgcatacttcagctggtaaaacggtggtcgccgagtacgcc
atcgcgctgtcgctcaagcatctgacaaaaacggtctacacatcacccatcaaggccctg
tccaatcagaagtttcgggatttcaaggaaaccttcggcggggacgtgggtctgctgacc
ggagacgtccagatcaaaacggactcgtcttgtctcatcatgacgacggagattttgagg
tcgatgttgtacaacggatcagatatcatacgtgacttggaatgggtgatctttgatgaa
gttcattacatcaatgattcagagagaggtgttgtatgggaagaagttctgatcatgctg
cctgcccacgttaagataatcctgctcagcgccacagtgcccaacacgctggaatttgcc
gattgggtaggacgcattaagaggaagaagatttacgtcatcagtaccttgaagcgacca
gtcccattggaacattttctgtacactggaaacagcaccaagaccaacaacgaactgttt
cttatcgtagattccacaaagaaattcttaacctcggggtaccataaagcagttgatgct
aagaaggaacgagagagcaaagcgtcttcgtctcatggagccaagggaccgagacagtgg
cctcacaaaggggacaaaggcgtgtatttgtccatcattgaaatgctacgcaagagggag
cagcttcccgtggtggcgttcacgttctccaagaagcgttgtgacgagaacgcaacgatg
ctgacgacgcttgacctgacgacgaccaacgagaagagcgaaatccacgtcttcatgcag
aagtgcgtggagcggttgaagggaaccgaccgcatgcttccacaggttcttcacatgcgt
gacttgttgaagcggggtatcgccgtccatcacagcggcatcttacccatcttgaaggaa
atgattgaaatgctgttccaacgaggccttgtcaaattactgttcgcaacagagaccttc
gccatgggtgtcaacatgcctgccaggacggtcatcttcgactccatccgtaagtttgac
ggcaccggtcagcgtaccttactggccggagagtacgtacagatggctggccgggcaggc
cggcgtggcctggacaccacaggaatggtcatcatactctgtaaaggtgacgtacctgag
tctgccgagctgcacaagatgatgttgggtaaacccacccagctggagtcccagttccgg
ctgacatacaccatgatcctcaacctgctctgcgtggaggagctgcgagtcgaagacatg
atgaagcgcagcttctcggagtccagcacccggaaagacgccaaggagtatgaggccaag
ctccgagtcatccaggaggagatgagcaacgtccagacgctgaactgctatctgtgccac
gaggatctggaccagtactaccagacctgcaagcagctgcaaggtctcaggctagaactc
aggaaaatgatagcatctcatcccttgggagtgaaggccctttcgccaggacgcgttgtt
attgtctccaccaaggagcatcgcaacgccctgggtgtcgtcctcagttcctccacagca
agcaaagagagaacattcaaaaccttagtcctgaccaatcacgccgacccagggggtgcg
ggcatgcaaaacggaacagctgacccaggcgggggtcaccgtgtacacgtgcagcccctg
cgtaaagagccgctattccggccggaggggccctgcggccacacggtcttggatctcgtc
gggcaggagatcggaaccgtcaccacggtcgccatcaagatcgccagcgaccggattgcg
gaggatttcaagaagagacagataccgagattcagggacaacccgcccagccagtccacc
agcctagccactcaggagctgttacggatcacggaggccaaccctgagggtctgacgtcc
ctggatcccgtcaaggacctgcatctacgagagctggaccaagtggagaagttccaagag
agggacacgctggagtctctcctggaccagtttggttgtcttaactgccctaacttcctg
gaacattttggcgtgatgtgtcaccgcatgaagctgaaggaagacttcaatcatctacgc
ttcctgctgtccgaccaaagccttcatctactcccagaataccatcaaagaatacaggtg
ctacggcacttgcgtcacatcgacggtgccaacaccatccagctgaagggtcgcgtggcc
cgtgtgatcagcaaccacgagctgatcatcacggagctggtgtttcagggtctcctgacg
ggcctgcccccggaggaaatcgcggccctgctgtcctgcatggtgttccaggagaaacgc
tgcagcgagcccgagcttacgccatccttaaaagagggagtgggcaagatcaaggccgag
gccaaacgcttggcagagatccaacacgagtgcggcatcaatctatccgtacaagactac
gttgagcagtttcgctttggtctgacgcaggtcgtgtacgaatgggcccgaggaatgccg
ttcgccgacatcacaaacctgacggacgtgtcagagggaatcatcgtccgcaccatccag
cgattggacgaggtctgtcgcgacgtccgcagtgcggcccgcatcgtcggcgacccgagt
ctcttccagaagatggacgaagcctcgcaactcatcaagcgagacattgtgtttgcggcc
agcctctacacccaatag
DBGET
integrated database retrieval system
