Patiria miniata (bat star): 119723807
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Entry
119723807 CDS
T11642
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pmin Patiria miniata (bat star)
Pathway
pmin03020
RNA polymerase
pmin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119723807
09124 Replication and repair
03420 Nucleotide excision repair
119723807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmin03021
]
119723807
03400 DNA repair and recombination proteins [BR:
pmin03400
]
119723807
Enzymes [BR:
pmin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119723807
Transcription machinery [BR:
pmin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119723807
DNA repair and recombination proteins [BR:
pmin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119723807
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
119723807
NCBI-ProteinID:
XP_038050606
UniProt:
A0A913ZHR3
LinkDB
All DBs
Position
Unknown
AA seq
1926 aa
AA seq
DB search
MALQFHDSKAPMRDVRRVQFGVLSPQEMRRMSVVEGGIKYAEVMEGGKPKLGGLMDPRQG
CVDRASRCQTCACNQVDCPGHFAHIELAKPVFHPGFLTKTVKILRCVCFFCSKMLVDQNH
PKVKEILSKSKGFPRKRLAHIYDVCRTKKICEGGEEMDQTFNADLAKREGEAPEPRNQGH
GGCGRYQPQIRRAGLDLTAEWKHVNEDTQERKIALTAERVHEIFKRISDEESLILGMDPK
FTRPDWIIITVMPVPPLCVRPAVVMFGSARNQDDLTHKLADIIKANNQLQKNEQNGAAAH
IIAEDTRMLQFHVATLSDNELPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDF
SARAVITPDPNLSIDQVGVPRTIAQNLTYPEIVTPFNIDKLQELVRLGHNQYPGAKYIIR
DNGERVDLRFHPKTSDLHLQCGYKVERHLRDDDVVIFNRQPTLHKMSMMGHRVKILHWST
FRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVTEIMMVPRQMVTPQSNRPVMGIVQDS
LTAVRKFTKRDVFLQKEELMNLLMWLPNWDGHIPQPAIIKPRPMWTGKQMMSLIIPSNIN
LIKAHSTHPDEEDRGPYKWISPGDTKVLIINGELISGIVCKKTIGASGGSLGHVIFMERG
HEVTRDFYGNIQTVVNNWLLLEGHSIGIGDCIADAQTYDDIQNTIRKAKQEVIDVIEKAH
NDELEPTPGNTLRQTFENQVNRILNNARDKTGGSAQKSLSEFNNFKCMVVAGSKGSKINI
SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEMFFHAM
GGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTLRNSNDHLVQLRYGEDGLDGTKV
EFQNLPTLKPSHKAFEKRFRFDCTNERALRRTLTEDIVKDVVANAQVHLEIEREYEQLKE
DREVLRKILPMGESKVVLPCNLERMIWNAQKIFHINTRHTTDLHPLKIVKGVRELSKNLV
VVKGEDRISKQAQENATLLFNMLLRSTLCSRRVIDEHHMTSESFDWLLGEIETRFNQALV
HPGEMAGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTV
FLIGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQSTVIEEDQDWVNLYYEMPD
FDPTRISPWLLRIELDRKRMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MSSDDSKFGEEEEQVDKMEDNVFLRCIESNILTDMTLQGIEQISKVYMHLPQQDNKKRII
ITEEGEFKAIQEWLLETDGTCMMKVLSDPEVDPVRTFSNDICEIFQVLGIEAVRKSVERE
MNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDVGALMRCSFEETVDILMD
AAAHAEVDHLKGVSENIMLGKLAGVGTGSFALLLDAEKCKHGMEIPMGMGGGLGGMTGMF
FGAAASPSASMSPQMTPWNQGATPAYGAAWSPMGSGMTPGGAGFSPSAQSDASGFSPGYS
PAWSPQPSSPGSPGPTSPYIPSPASPMSPSYSPASPSYITGSPATPQSPGYSPTSPSYSP
SSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPKYSPT
SPSYSPTSPSFSAKSPSYSPTSPSYSPTSPSYSPTSPAGYSPQSPSYSPGSPSYSPSSPK
YSPSSPSYSPTSPSYSGASHFTPTSPEYSPTSPTYSPASPSYSPSSPKYSPSSPKYSPAS
PTYSPQTPKYSPTSPSYSPTSPKYSPGSPSYSPTSPQDSYSPMSPGYSPASPSYSPSSPD
IDGADD
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttcagtttcacgactccaaagccccgatgcgggatgtcagacgcgtgcagttt
ggtgtcctcagcccccaggaaatgcgtcgcatgtcggtggtagagggtggcatcaagtat
gctgaggtcatggaaggtggcaagcccaagctgggtggtctgatggaccctcgtcagggt
tgcgtggaccgcgcctctcgctgtcagacctgcgcctgcaaccaggtggactgcccaggc
cactttgcccacattgagcttgccaagcctgtattccacccaggcttcctgacgaagact
gtcaagatcctgcgctgcgtttgcttcttctgttccaaaatgttggtggaccagaaccac
cccaaagtcaaagagatcctgagtaagtccaagggtttccctcgcaagcgcctagcccac
atctacgatgtttgccggaccaagaagatctgtgagggcggagaggagatggaccagact
ttcaatgccgacttagccaaacgagagggggaagcaccagaacctagaaatcagggtcat
ggtggctgtggaaggtaccagccccagatccgccgggctggactggacctgacagcagag
tggaagcatgtcaatgaggacacgcaggagcgcaagattgccttgacagctgaacgtgtc
catgagatcttcaagcgcatctcagatgaggagagcttgatccttgggatggaccccaag
ttcacccggccagactggataatcatcacagtcatgcctgtcccaccgctctgtgtcagg
ccggctgtagtcatgtttggctcagctagaaatcaggacgatctgacacacaagttggcg
gacatcatcaaggccaacaatcaactccagaagaatgaacagaatggtgctgctgcccat
atcatagctgaagacacaaggatgctacagttccatgtggctacactctctgacaatgag
ctaccaggattgcctagggccatgcagaagtccgggcggcccctcaaatcagtcaagcag
cgactgaaaagcaaagagggtcgtattcgtggcaacctgatgggtaagcgtgtagacttc
tcagcccgtgctgtgatcaccccagatcctaatctgtccatcgaccaagttggagtgccc
aggactattgctcagaatctgacctacccagagatcgtcacacccttcaacattgacaag
ctccaagagctggtgcgattgggtcacaaccagtacccaggggctaaatacatcatccga
gacaacggtgagcgtgtagacctgagattccacccaaagacaagtgacttgcacttgcag
tgtggctacaaggttgagcgacatcttcgggatgatgacgtggtcatctttaaccgccag
ccgactctccacaaaatgtccatgatgggtcaccgggtcaaaattctccactggtccacg
tttcgtcttaacctcagtgtcacaactccttacaatgccgactttgacggtgacgaaatg
aacctgcatgtgccccagtccatggagacgcgggctgaagtgactgagatcatgatggta
ccccgccagatggtaaccccgcagtcaaaccgacctgtcatgggtattgtgcaggattcc
ttgacagctgtcaggaagtttaccaagcgtgatgtgttcctacaaaaggaggagctgatg
aaccttctgatgtggttgcccaactgggacggccacatcccccaaccggccatcatcaag
ccccgccccatgtggacaggcaagcagatgatgtcgctaatcatcccttccaacatcaac
ctgatcaaggctcacagcactcacccagatgaggaggaccggggtccttacaaatggatc
tctcctggagacactaaggtgctgatcatcaatggggagctcatctcaggcattgtttgt
aagaagaccatcggtgcgtctgggggatcgctgggtcacgtgatcttcatggagcggggt
catgaagtcacccgagacttctatggcaacatccagacagtggtcaacaactggctactt
ctggaaggccacagtatcggtattggtgactgtattgccgatgcacagacctatgatgac
atccagaacacgatccgcaaagccaaacaggaagtcatagatgtcattgagaaggcccac
aatgatgagttggagcccacaccgggcaacacactcagacagactttcgagaatcaggtg
aaccgtatcctgaacaatgcccgtgacaagaccggtggtagtgcccagaagagcttgtct
gaattcaacaacttcaagtgcatggtggtagctggctccaaaggttccaagatcaacatc
tcccaggttattgcctgtgtaggccagcagaatgtagaaggcaagcgtatcccctttggt
ttccgtcaccgcacactcccccacttcatcaaggatgactatggccccgagagcagaggc
tttgtagagaattcttaccttgctgggctgaccccctctgagatgttcttccatgccatg
ggtgggagagagggtctgattgacacagctgtcaagactgcagaaactggttacatccag
cgtcggctgattaaggccatggagagtgtcatggtgcgctatgacggcacactacgtaat
agcaatgaccacctggtgcagctacgttatggtgaggatgggctggatggtaccaaagta
gagttccagaaccttcccaccctcaagccctcccataaggcctttgagaaacgcttcagg
ttcgactgtaccaacgaaagagcattgcgccgtaccttgactgaagacattgtcaaggat
gtagttgcaaatgcccaagttcatctggaaattgagagagagtatgagcagctgaaggag
gatcgggaggtgttgaggaagattctgcccatgggagagtctaaggttgtgttgccatgc
aacttggagcgcatgatctggaatgcacagaagatcttccacattaataccaggcacacc
acagacctgcatccactgaaaattgtaaaaggcgttcgtgagctatctaagaatttagtg
gtggtaaagggggaggatcgcatcagcaagcaggcccaagagaatgccaccttgctcttc
aacatgctgctgcgctccacgctctgttcccgtcgtgtcatcgacgagcaccacatgacc
agtgagtcctttgattggctgctgggtgagattgagacccgattcaatcaggcactggtt
caccctggtgagatggcaggtcccctggcagcccagtccctaggtgagccagctacccag
atgaccctgaacaccttccactacgccggtgtgtcagctaagaacgtgaccttaggagta
cctcgcctcaaagagatcatcaacatctctaagaagcccaagacaccttccctgactgtc
ttcctgatcggccaggctgcacgagatgctgagagagcaaaggatatcctgtgccgatta
gagcacaccaccttgcgcaaagtgacggcaaacacggccatctactatgacccagagccc
cagagcactgtcattgaggaggatcaggactgggtcaacctgtactatgagatgccagac
tttgaccctactcggatctccccatggctgcttcgtattgagctggaccgcaagcgcatg
acggaccgtaagctaaccatggagcagatagctgagaagatcaacgcaggctttggtgac
gatttgaactgtatcttcaatgatgacaatgctgagaagctggtgctgcgcatccgaatc
atgagcagtgatgacagcaagtttggcgaggaagaggaacaagtggacaagatggaagat
aacgtcttcctgcgttgcattgagtctaacatcctgactgacatgacactgcaggggatt
gagcagatcagcaaggtgtacatgcacttgccacagcaggacaacaagaagcgtatcatc
atcacagaggagggagagtttaaggccattcaggagtggttactggagacagatgggacc
tgtatgatgaaggtactcagtgatcctgaggtggaccctgtccgtaccttctccaacgac
atctgtgagatattccaggttcttggcattgaggctgtacgcaagtccgtagagcgtgag
atgaaccatgtcatctcctttgatggctcctatgtcaactaccggcacctggccctgtta
tgtgatgtcatgactgccaaaggtcacctgatggccatcacacgccatggtatcaacagg
caggatgtgggcgctctcatgaggtgctcctttgaggaaacggtggatatcctgatggac
gcagcagctcacgctgaggtggaccacctcaagggcgtatctgagaacatcatgctgggc
aagctagctggggtgggcactgggtcctttgcactgctgctggatgctgagaaatgcaag
catggcatggagatccctatgggaatgggtggaggactcggtggaatgactggcatgttc
tttggtgcggctgcatcaccatctgccagtatgtcacctcagatgactccatggaatcaa
ggagcaaccccagcttacggtgcagcatggtcacccatgggaagcggaatgacccctgga
ggtgcaggctttagcccctcggcccaatcagatgccagtgggtttagccctggctacagc
cctgcctggtctccgcagccaagctcccctggttccccaggcccaaccagcccatacatc
ccatctccagccagcccaatgtcgcccagctattcgccggcatcaccatcttacatcact
ggttccccggctaccccacagagtccgggttactcccctactagcccctcctactcacca
tcaagtcctggttactcaccaaccagcccaagctactcgcccacgagccccagttattcc
ccgacaagtcccagctactcgcccaccagccctagttactcgccaacaagtccaagctac
tcacccaccagcccaagttacagccccactagccccagttacagcccaaccagcccaagc
tacagcccgacgtcacccagctactccccaacgagcccctcctacagtcccacctctccc
agctactcaccaacttcacccagttacagccccacctcacccagttactccccaacctca
cctagttactccccaacctcacccagttactcacctagctctcccaaatactcgccaaca
agccccagctactcgccaaccagccccagcttctcagccaaatcgcccagctacagccca
acttcgcccagttactctccgacctctcccagctacagcccaacatctcctgctgggtac
tccccacagtctcccagttacagccctggttcgcccagttactccccctccagtcctaag
tactccccctccagcccgtcctacagcccaacctctccaagttacagcggggcatcccac
ttcactcctacatcaccagagtacagcccgaccagccctacttactcccctgccagccca
agctattccccatcaagtcccaaatactccccatcaagccccaaatattccccagcaagc
ccgacttattccccacagacacccaagtacagcccaacgtccccatcatattcccctaca
agtcccaagtacagtcctggttcaccttcttattctcctacaagtccacaggattcttat
tcccccatgtcacctggttactcccctgcatccccctcttacagccctagcagcccagat
atcgatggagctgatgattag
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integrated database retrieval system
