Prochlorococcus marinus MIT 9211: P9211_10851
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Entry
P9211_10851 CDS
T00616
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmj
Prochlorococcus marinus MIT 9211
Pathway
pmj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9211_10851 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmj03019
]
P9211_10851 (srmB)
03009 Ribosome biogenesis [BR:
pmj03009
]
P9211_10851 (srmB)
Enzymes [BR:
pmj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P9211_10851 (srmB)
Messenger RNA biogenesis [BR:
pmj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P9211_10851 (srmB)
Ribosome biogenesis [BR:
pmj03009
]
Prokaryotic type
rRNA helicases
P9211_10851 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
AAA_30
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABX09016
UniProt:
A9BB04
LinkDB
All DBs
Position
986500..988314
Genome browser
AA seq
604 aa
AA seq
DB search
MATKKTQAGSSCLKKTGSSKELSLESESVSEVASKDQSKLSINENPEVHKSLGFEGFGFS
DDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILERIKQDTRA
PQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINALRRGVQIVVGTPG
RVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQMIFFSATMPSEI
RRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVIQNSFKLEALKRVLETTADEGVIIFART
KAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVATDVAARGLDVERI
GLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFINNLERAVGQSIEKMEIP
NNEIINQHRINKLKNNLSQAVETPRQHEEETEILKCLIKEVGEELEIETKDIAVAALNLA
IGSLPLKIQEDESWLSQQNISRKNYDRRDDRGRSRRKNSFNSSHPDKDKERYKLDVGHRD
RVKPGNIVGAIANESGLKGNMIGRIQIFDNYSLVDLPKGMPTNIYKSLKTVKVMNKELNI
NLYK
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaaaaaactcaggctggttcttcatgtttaaaaaagacaggaagttctaaa
gaattaagcttagaaagtgaaagcgtttcagaggtagcttctaaagaccaatcaaaactt
tccattaatgaaaatcctgaagttcataaatctctaggttttgaaggttttggatttagt
gatgatctgataaacacactggaaagtaagggttacaaagaccctaccccaattcaaaaa
gcagccttcccagaattgatgctcggccgagatctcctaggtcaagctcaaacagggaca
ggaaaaacggctgcctttgctctaccaatacttgaaaggataaaacaagacacgcgtgcg
cctcaagttctcgtcctagcacctacgcgcgaacttgccatgcaagtagcagattcattt
cgtgcttatgcccagggaaggcccgaggttcaagttctagcagtatatggaggctcagac
ttcagagcgcagatcaatgcactcaggagaggtgtacaaattgttgtggggacgcctgga
agagtcatggatcatattagacaagggacttttataaagactgatttggaaacacttgtt
ctagatgaagcggacgaaatgctaaggatgggctttattgatgatattgagtggatactc
gaacagttgcctgcaaagcgtcagatgatattcttttcagcaacaatgcctagtgagata
agacgtttatcaaaacagtatctacatgaaccagctgaaattacgattaaagcccaaaag
aaagaagctcaattgattcgacaaaggtatattgtaattcaaaatagtttcaagcttgaa
gcattaaaaagggtacttgaaacaactgcagatgaaggagttattatctttgctaggaca
aaggccattacccttagactttccgaaagtctagaagccttaaatcataatgtcgccgtt
ctaaatggagatgtaccacaaaccttaagagaaagaacaattgaacgcctacgccaggga
ggtatagatatacttgttgcaacagatgttgcagcaaggggacttgacgtagaacgaatt
ggacttgtaattaattacgatatgccttttgattcagaggcttatgtgcatcgcattgga
agaactggtagggcggggagaactggggaagcaatccttttcgtaagcccaagagaaaga
tcttttataaacaatctagaacgagcggttggtcaaagtatagaaaagatggaaattcca
aataatgaaatcattaatcaacaccgaattaacaagctcaaaaacaatttgagccaagca
gttgagacacctagacaacatgaagaggaaacagaaattctgaaatgcctgattaaagaa
gtaggtgaagaattagagatagagactaaagacattgcagtagccgcattaaatcttgca
ataggtagtctcccactgaaaattcaagaggacgagagttggttaagtcaacaaaacatc
tcacgtaaaaactatgaccgtcgagacgatagaggcagatcacgtcgaaaaaatagcttt
aactcctcgcatcctgataaagataaagagcgttataaattagatgtaggccatagagat
agagtaaagccaggaaatattgtaggtgctatagccaatgagagtggtctaaaaggaaac
atgataggccgcatacaaatttttgataattacagtttagtagacctacctaaaggtatg
cccacaaatatttataaaagcttgaagacagttaaagtaatgaataaagagctaaatatt
aatctttataaataa
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