Ectopseudomonas mendocina NK-01: MDS_0369
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Entry
MDS_0369 CDS
T01473
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDS_0369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_0369
03019 Messenger RNA biogenesis [BR:
pmk03019
]
MDS_0369
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MDS_0369
Messenger RNA biogenesis [BR:
pmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MDS_0369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
Fungal_virus_P2_C
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AEB56400
LinkDB
All DBs
Position
385658..386917
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPIAELLDMAEQMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNQRLTMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALIETGSKMDEVIYEEFKGTGNMELILDRRVAEKRTFPAINI
NKSGTRREELLTGEEELSRMWILRKLLHPMDEIAAIEFLIDKLKATKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattgccgaactgctggacatggccgaacag
atgggcctggaaaacatggcccgttcgcgcaagcaggacatcatcttcgccctgctgaaa
aagcatgccaaaagcggtgaggaaatttccggtgacggcgtgctggagatcctccaggac
ggtttcggcttcctgcgtagcgccgactcctcctacctggcgggccctgacgacatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgtccgccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacagcatcaac
ttcgaccgcccggaaaacgccaagaacaagattctgttcgagaacctgacgccgctgttc
ccgaatcagcgcctgaccatggaagccggtaacggctccaccgaggacatcaccggccgc
gtgatcgacctctgcgcgccgatcggcaagggccagcgcggcctgatcgttgccccgccg
aaagcgggcaagaccatcatgctgcagaacattgcctcgaacatcacgcgtaacaacccg
gaagtgcacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctctaccttcgacgagccgccgacccgtcacgtg
caggtcgccgaaatggtcatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctcaccggtggtgtcgacgcccacgccttggagaagcccaagcgcttc
ttcggcgccgcgcgtaacatcgaggaaggcggcagcctgacaatccttgcgaccgcgctg
atcgaaaccggctcgaagatggacgaggtgatctacgaggaattcaagggcaccggcaac
atggagctgatcctggatcgccgcgtggccgagaagcgcaccttcccggcgatcaacatc
aacaagtccggcacccgccgcgaagagttgctgaccggcgaggaagagttgtcgcgcatg
tggattctgcgcaagctgctgcacccgatggacgagatcgcggccatcgagtttctgatc
gacaagctgaaagcgacgaagacgaacgacgagttcttcctgtcgatgaagcgcaagtaa
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