Ectopseudomonas mendocina NK-01: MDS_0475
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Entry
MDS_0475 CDS
T01473
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDS_0475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmk03019
]
MDS_0475
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MDS_0475
Messenger RNA biogenesis [BR:
pmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MDS_0475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEB56506
LinkDB
All DBs
Position
complement(507762..509660)
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AA seq
632 aa
AA seq
DB search
MSFASLGLSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPIL
ERLFPAGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKASKV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASAVEAERPEVREPRQPRNAGQQKKQKAEGGDKPKGERH
SGGRKDKGKDGGKEQKAKPQQAQNRRGQGPRSGGQGQAVAAIPALPPDRDPEEFLDDEID
NFGNRVDYVSPNQNKQQGRGRRSGGAPANGAAQGQPRQNGKGPRSNNNGGSNGAGKNRRQ
GGGQAGQGGQGRNGGNRGRGRPASDGRITSLDRDELPRSDAAVRNPREKQPIIMHKGSRL
DRFPTAEQLDELSNNSRPRGEKPALLTRNRDE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtccgtgcgatcgaatccgccggc
tacacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctcatggtggcggcgcagacgggcacgggcaagaccgcaggtttcgccctgccgattctc
gagcgtctgttccccgccggtcacccggaccgtgaacagcgccacggcccgaaacaaccg
cgcgtgctggtgctgacccccacccgcgagctggccgcccaggtccacgacagcttcaag
atctacgcacgtgacctgaaattcgtcagcgcctgcattttcggcggtgtcggcatgaac
ccgcaggttcaggcactggccaagggtgtcgacgtcctcgttgcctgcccgggccgcctg
ctcgacctggcaggccagggcagcgtcgatctgtcccacgtggaaatcctggtgctggac
gaagccgaccgcatgctcgacatgggtttcatccatgacgtgaagaaggtcctggcccgc
ctgccggcgcagcgccagaacctgctgttctcggcaaccttctccaaggacatcaccgac
ctggccggcaagctgctgcacaaccccgagcgcatcgaggtcaccccgccgaacaccacg
gtcgagcgcatcgaacagcgtgtattccgcctggcggccagccacaagcgtgccctcctc
gcccacctgatcactcagggtgcctgggaacaggtgctggtctttacccgcaccaagcac
ggtgccaaccgcctggccgaatacctcgacaagcacggcctgccggctgccgcgattcac
ggcaacaagagccagaacgcgcgcaccaaagcactggccgacttcaaggcgagcaaggta
cgtatcctggttgccaccgacatcgctgcccgtggcctggacatcgaccaactgccgcac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgtccaccgtatcggccgtacc
ggccgcgccgggcgtagcggtgaggccatttcgctggtcgccccggacgaagagaagctg
ctgaaaagcatcgagcgcatgaccaagcagaagatccccgatggcgatctgatgggcttc
gatgccagcgccgttgaagcggagcgcccggaagtgcgtgagccgcgccaaccgcgtaat
gcaggccagcagaagaagcagaaggccgaaggcggcgacaagcccaagggcgagcgccac
agcggtggccgcaaggacaagggtaaggacggcggcaaggaacagaaggccaagccgcaa
caagcccagaaccgcagaggccaaggcccgcgtagcggcggccagggccaggctgtggca
gccatcccggcgctgccgccggatcgtgatccggaagaattcctcgacgacgagatcgac
aacttcggcaaccgtgtcgactacgtcagcccgaaccagaacaagcagcagggtcgtggt
cgacgctccggtggtgcaccagccaatggcgctgcacagggtcaaccacgccagaacggc
aaagggccgcgcagcaacaacaacggcggcagcaatggcgcgggcaagaaccgtcgccag
ggtggcggtcaggctggccaaggtggtcagggccgtaacggcggcaatcgtggccgcggt
cgccctgccagtgacggccggatcacctcgctcgaccgcgacgagctgccacgttccgat
gcggccgtgcgcaacccacgtgaaaagcagccgatcatcatgcacaagggctcgcgcctg
gatcgcttccccactgccgagcaactcgacgagctgagcaacaactctcgcccgcgcggc
gagaagccggccctgctgacgcgcaaccgcgacgagtaa
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