Ectopseudomonas mendocina NK-01: MDS_0871
Help
Entry
MDS_0871 CDS
T01473
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk00260
Glycine, serine and threonine metabolism
pmk00460
Cyanoamino acid metabolism
pmk00630
Glyoxylate and dicarboxylate metabolism
pmk00670
One carbon pool by folate
pmk00680
Methane metabolism
pmk01100
Metabolic pathways
pmk01110
Biosynthesis of secondary metabolites
pmk01120
Microbial metabolism in diverse environments
pmk01200
Carbon metabolism
pmk01230
Biosynthesis of amino acids
pmk01240
Biosynthesis of cofactors
pmk04981
Folate transport and metabolism
Module
pmk_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
MDS_0871
09102 Energy metabolism
00680 Methane metabolism
MDS_0871
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
MDS_0871
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
MDS_0871
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
MDS_0871
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
MDS_0871
Enzymes [BR:
pmk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
MDS_0871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
Aminotran_5
DegT_DnrJ_EryC1
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
AEB56902
LinkDB
All DBs
Position
complement(956452..957705)
Genome browser
AA seq
417 aa
AA seq
DB search
MFSRDLTLARFDAELFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYP
GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANSAVYMALLNAGDTVLGMS
LAHGGHLTHGASVSFSGKIYNAVQYGITDAGLIDYDEVERLAVEHKPKMIIAGFSAYSQV
LDFPRFRAIADKVGAYLFVDMAHVAGLVAAGLYPNPVPFADVVTTTTHKTLRGPRGGLIL
ARKNEELEKKFNSAVFPGGQGGPLEHVIAAKAVCFKEALQPEFKAYQAQVIKNAQTMAQV
FIDNGYDVVSGGTENHLFLLSLIKQDITGKDADAALGRAFITVNKNSVPNDPRSPFVTSG
LRIGTPAVTTRGFKEDECRQLAGWICEVLANIGNDEVEGRVREQVKALCAKFPVYAN
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagccgtgatttgaccctcgctcgttttgacgccgaactctttgccgcaatggag
caggaagcccagcgccaggaagagcacatcgagctgatcgcctcggaaaactacaccagc
ccggcggtgatggaagcccaaggcagcgtgctgaccaacaagtacgccgaaggctacccg
ggcaagcgctactacggtggttgcgagtacgtcgacgtggtcgagcagctcgccatcgac
cgcgccaaggagctgttcggcgccgactacgccaacgtccagccgcactccggcagccag
gccaacagcgccgtgtacatggccctgctcaacgctggtgacaccgtgctgggcatgagc
ctggcccacggcggccacctgacccacggcgccagcgtcagcttctccggcaagatctac
aacgccgtgcagtacggcatcaccgacgccggcctgatcgactatgacgaagtcgagcgc
ctggcagtcgagcacaagccgaagatgatcatcgccggcttcagcgcctattcgcaggtg
ctggacttcccgcgcttccgcgccatcgccgacaaggtcggtgcctacctgttcgtcgac
atggcgcacgtggcaggcctggtcgctgccggtctgtacccgaacccggtaccgttcgcc
gacgtggtcaccaccaccacccacaagaccctgcgcggcccgcgtggcggcctgatcctg
gcgcgcaagaacgaagagctggagaagaagttcaactccgcggtattcccgggcggccag
ggcggcccgctggagcacgtcatcgccgccaaggccgtgtgcttcaaggaagctctgcag
cctgagttcaaggcttaccaggcgcaggtgatcaagaacgcccagaccatggcccaggtg
ttcatcgacaatggctacgacgtggtttcagggggcaccgagaaccacctgttcctgctc
tcgctgatcaagcaggacatcaccggtaaggatgccgacgctgccctcggccgcgccttc
atcaccgtgaacaagaacagcgtgccgaacgacccgcgttcgccgttcgtcacctccggc
ctgcgtatcggcaccccggccgtgaccacgcgtggcttcaaggaagacgagtgccgacaa
ctggcaggctggatctgcgaagtgctggccaacatcggcaacgatgaggtcgaaggccgc
gtgcgcgagcaggtcaaagcgctttgcgccaagttcccggtctacgccaactaa
DBGET
integrated database retrieval system