Ectopseudomonas mendocina NK-01: MDS_1235
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Entry
MDS_1235 CDS
T01473
Name
(GenBank) deoxyribodipyrimidine photolyase-related protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_1235
Enzymes [BR:
pmk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
MDS_1235
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
MDS_1235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
AEB57266
LinkDB
All DBs
Position
1352474..1354027
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AA seq
517 aa
AA seq
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MTFDIEGGVRRLILILGDQLTLGLGALADIDPQRDHVLLAEVMEEASHVPHHPKKIALIF
SAMRHFAETLRAQGVQVHYVTLDDPHNSGSLPGELQRWTQWLDPAEVHLTECGDWRLEQS
LRHCGVSIHWHQDSRFLCTREAFAAWAKGRKQLRMEFFYREMRRTSGLLLNPDGTPEGDA
WNFDADNRKALPKGVQPPAPLRIEPDAITAEVLELVSRRFADHYGSLEGFDYPVTADEAE
RLWQYFLAHGLADFGDYQDAMADGEPFLFHSRISAALNIGLLDLRRICAEVEAAYRAGEV
PLNAAEGFIRQLIGWREYVRGIYWLRMPEYAEGNRFGNSRALPEFYWTGKTRMKCMRQAI
GQTLEHAYAHHIQRLMVTGNFALLAGIAPKAICDWYLAVYMDAFDWVELPNTLGMVMHAD
GGYLGSKPYCASGQYIKRMSNHCQGCSYKVSESTGESACPFNALYWHFLMRHREPLQRNP
RLGMVYRNLGRMNEARQQALWDWGEHLLARLDAGEVL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgatatcgagggcggcgtgcgccgcctgatcctgattcttggcgaccagctc
acactcggcctcggtgcactggcggatatcgacccgcagcgggatcatgtgctgttggcc
gaggtgatggaggaggccagccatgtgccgcatcacccgaagaagatcgctctgatcttc
agtgccatgcgccatttcgccgagaccttgcgcgctcagggcgtgcaggtgcactacgtg
acgctggatgatccgcacaacagcggatccttgcccggtgagctgcagcgctggacgcag
tggctcgaccccgccgaagtgcatctgaccgagtgtggcgactggcgtctggaacaatcc
ctgcgtcactgtggcgtgtcgattcactggcatcaggacagccgttttctctgcacgcgc
gaggccttcgccgcctgggcgaaggggcgcaagcaactgcgtatggagttcttctaccgc
gagatgcgccgcaccagtggcctgctgctcaacccggatggcacacccgagggcgacgcc
tggaacttcgatgccgacaaccgcaaggcgttgcccaagggcgtgcaaccgcctgcgccg
ctacgtatcgagccggatgccatcaccgccgaggtactggagctggtatcgcggcgtttc
gccgatcactacggcagcctggaaggcttcgattacccggttacggccgacgaggccgag
cgcctctggcagtattttctcgcccatggcctggccgatttcggtgactatcaggatgcc
atggccgatggcgagccctttctctttcactcgcgcatcagcgccgcattgaatatcggt
ttgctcgatctgcggcggatctgcgccgaggtcgaggcggcctatcgcgcaggcgaggtg
ccgctgaatgccgccgaaggcttcattcgccagttgatcggttggcgcgagtacgtacgc
gggatttactggctgcgcatgccggagtatgccgagggcaatcgcttcggcaattcacga
gcgttgcccgagttctactggaccggcaagacgcgcatgaagtgcatgcgtcaggccatc
ggccagacgctggagcacgcctatgcgcaccatatccagcggctgatggtgaccggcaac
ttcgcgctgctggccggcatcgcgcccaaggccatctgcgactggtacctggccgtgtac
atggacgccttcgactgggtcgaactgcccaacactttgggcatggtgatgcacgccgac
ggtggctacctcggttccaagccctattgcgccagtggccagtacatcaagcgcatgtcc
aatcattgccagggctgcagctataaggtgagcgagagcaccggcgagtcggcctgcccg
ttcaacgcgttgtactggcacttcctcatgcgccaccgcgagccgttgcaacgtaatccg
cgcctcggcatggtctatcgcaacctggggcgcatgaacgaggccaggcagcaggcgcta
tgggactggggcgaacacctgctggccaggctcgatgcgggtgaggtgctgtga
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