Ectopseudomonas mendocina NK-01: MDS_1336
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Entry
MDS_1336 CDS
T01473
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmk03009
]
MDS_1336
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MDS_1336
Ribosome biogenesis [BR:
pmk03009
]
Prokaryotic type
rRNA helicases
MDS_1336
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEB57367
LinkDB
All DBs
Position
1455363..1456688
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AA seq
441 aa
AA seq
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MFAQFALHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLN
RLLGDGNSKQRLSIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQAAMM
RKIDILIGTPGRLIEHANAGNLPLDEVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTL
LFSATTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNYHKEQLVDWLLAN
ETYDKAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVRVLVAT
DVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAVSLICHTDWNLMSSIER
YLKQRFERRTIKELKGVYQGPKNLKASGKAAGSKKKKAEKKDPKKAAAPKRKTGPRPAGK
PSALVSADGSAPLKRKKPAAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgcccaattcgccctgcatgaacgcctgctgaaagctgttgccgagcttaacttc
gtcgagccgactccggtgcaggcggcagcgattccgcctgcgctggagggcaaggacctg
cgggtgattgcccagaccggcagcggcaagaccgccgcgttcgtcctgccgctgctcaat
cgcctgctgggtgacggcaactccaagcagcgcctgagcattcgcgcgctgatcctgctg
ccaacccgcgagctggcgcagcagacgctcaaggaagtcgagcgcttcgcccagttcacc
tttctcaaggccggtctggtcaccggtggcgaggacttcaaggtgcaggctgcgatgatg
cgcaagatcgatattctcatcggcacgccggggcgtctgatcgagcatgccaatgccggc
aacctgccgctggatgaggtcgaggtgctggtgttcgacgaggctgaccgcatgcttgac
atgggcttcgccgaagatgcccagcgcctggccgaagcctgtggcccgcaccagaccctg
ctgttttccgccaccaccggcggcaatggcctgcgcgagatggttgccaaggtgctcaag
gaaccgcagcacttgatgctcaacagcgtcagccagctcaacgaaggtacgcgtcagcag
atcatcactgccgatcacaactaccacaaggaacagttggttgactggcttctggccaac
gagacctacgacaaggccatcgtcttcaccaacactcgtgtgcaggccgaccgcctatat
ggcaagttggtcgccgccggggtcaaggcgttcgtactgcacggtgagaaggaccagaag
gaccgcaagctggccatcgagcgcctccgtcagggggctgttcgcgtgctggtcgccacc
gacgtggcggcgcgtggcctggatgtcgaaggtctggatttggtgattaacttcgacatg
ccgcgttccggcgacgaatacgtgcaccgcatcgggcgcaccggccgagccggtggcgaa
ggcctggctgtgtcactgatctgccataccgactggaacctgatgtcgagcatcgaacgc
tacctcaagcagcgtttcgagcgtcgtaccatcaaggagctgaaaggcgtctatcagggg
ccgaaaaacctcaaggcgtccggcaaggccgctggcagcaagaagaaaaaagccgagaag
aaggacccgaagaaagccgccgcgcccaagcgcaagaccggcccacgtccggctggcaaa
ccttctgcgttggtcagcgccgatggcagtgcgccgctcaagcgcaagaagccggctgcg
gagtaa
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