Pseudomonas mendocina NK-01: MDS_1390
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Entry
MDS_1390 CDS
T01473
Name
(GenBank) biotin carboxylation domain-containing protein
KO
K01941
urea carboxylase [EC:
6.3.4.6
]
Organism
pmk
Pseudomonas mendocina NK-01
Pathway
pmk00220
Arginine biosynthesis
pmk00791
Atrazine degradation
pmk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09100 Metabolism
09105 Amino acid metabolism
00220 Arginine biosynthesis
MDS_1390
09111 Xenobiotics biodegradation and metabolism
00791 Atrazine degradation
MDS_1390
Enzymes [BR:
pmk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.6 urea carboxylase
MDS_1390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CT_A_B
CPSase_L_D2
Biotin_carb_N
CT_C_D
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
Biotin_lipoyl_2
ATP-grasp
RimK
HlyD_3
ATP-grasp_3
ATP-grasp_5
GCV_H
HlyD_D23
TIP39
NQRA
ATPgrasp_Ter
Motif
Other DBs
NCBI-ProteinID:
AEB57421
LinkDB
All DBs
Position
complement(1510824..1514519)
Genome browser
AA seq
1231 aa
AA seq
DB search
MFDKLLIANRGAIACRILRTLRELDVKGVAVYSEADAASLHIQQAAEAFSLGDGPAAQTY
LVVDKILAAAKTSGARAIHPGYGFLSENAAFAETCEAAGIAFVGPTPEQLRVFGLKHTAR
ALAKQHGVPMLEGTELLENLDAALVAGEQVGYPVMLKSTAGGGGIGMRVCRSAEELSDAF
EAVKRLGQNNFSDSGVFIEKYIQRARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVLEE
TPAPNLPAGMADELCAAAIKLAKAVNYRSTGTVEFVYDSEAERFYFLEVNTRLQVEHGVT
EQVWGVDLVRWMIELAAGDLPPLGELGKALKPSGHAIQARLYAEDPGRDFQPSPGLLTAV
QFPEADGKALRIDTWVEAGCEIPPYFDPMIAKLITWAPTREQASAALDKALADSVLYGVE
CNRDYLRQILSDAPFASGSPWTRCLENLAYQATTFEVLSAGTQTTVQDFPGRIGYWAVGV
PPSGPMDSRALRLGNRLLGNDEGAAALEITMSGPLLRFNTDAVIAVTGAEIPLSIDGVEQ
PMNTALLVKAGSNLTLGTIAGAGARSYLSIRGGIQVPDYLGSKSTFTLGQFGGHGGRALR
AGDVLHIPALADRQAGNQLPAELYPALPTVREIRVIYGPHGAPEYFTPAYIDTFFATAWE
VHFNSSRTGVRLIGPKPEWVRESGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPS
LGGFVCPVTIIEADLWQLGQLKAGDKVRFVPVDIATARELAKASASECNTLRGSGFSRDA
GGTEIADKSAPTDTTVARMQSGEIAAPESRIASGLQPPIVLDLGEGDTRLVARLSGDTHL
LLEIGQPELDLVLRFRGHALMQALEAKRLDGVIDLTPGIRSLQVHYQPETLALHELLDIV
AGEWDAVCAARDLKVPSRIVHLPLSWDDPACQLAIEKYMTTVRKDAPWCPSNLEFIRRIN
DLENLDEVYRTVFDASYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTAENSVGI
GGAYMCVYGMEGPGGYQFVGRTLQMWNRYREVAAFGGKPWLLRFFDQIRFYPVSADELLR
IRRDFPLGRFDLRIEESELALADYQQFLTDEADGIAAFRDQQRTAFAAERQRWIDSGQAH
FESDEGVAEETEDAPLGAGQCSVNSHIAGNLWQVQVEAGARVEAGDVLVILESMKMEIPL
TAPMAGTVREVRVQPGSPVRPGQRVVVLEEA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaaactcctgatcgccaaccgtggcgccatcgcctgccgcatcctgcgcacc
ctgcgtgagctcgacgtcaaaggcgtcgccgtctactccgaagccgacgccgccagcctg
catatccagcaggccgctgaagccttctccctcggcgacggcccggccgcgcaaacctac
ctggtggtcgacaagatccttgccgctgccaaaaccagcggcgcccgcgccatccacccc
ggctacggttttctctcggaaaacgccgccttcgccgaaacctgcgaagccgccggtatc
gccttcgtcggcccgacgcccgagcaactgcgcgtattcggtctcaagcacaccgcccgc
gccctggccaagcagcacggcgtgccgatgctcgaaggcaccgagctgttggaaaacctc
gacgccgccctggtcgccggtgaacaggtcggttacccggtgatgctgaaaagcaccgcc
ggcggcggcggtatcggcatgcgcgtctgccgttcggccgaggaactgagcgatgccttt
gaagcagtcaaacgccttggccagaacaacttcagcgacagcggcgtattcatcgaaaag
tacatccagcgcgcccgccatctggaggtgcaggtgttcggcgacggccagggcgaagtg
atcgccctcggcgtacgtgactgctcggtgcagcgccgcaaccagaaggtgctggaagaa
actccggcgccgaacctgcccgctggcatggccgacgaactctgcgcggcggcgatcaag
ctggccaaggcggtgaattaccgcagcaccggcaccgtcgagttcgtctacgacagcgag
gccgagcgtttctactttctggaagtgaacacccgcctgcaggtcgagcacggcgtcacc
gaacaggtatggggcgtcgacctggtgcgctggatgatcgagttggcggccggcgatctg
ccgccgctgggcgaactgggcaaagccctcaagccatccggccacgccatccaggcgcgg
ctgtacgccgaagatccgggccgcgacttccagcccagccccggcctgctgactgccgtg
cagtttcccgaagccgacggcaaggccctgcgcatcgacacctgggtcgaagccggctgc
gagattccgccctacttcgacccgatgatcgccaagctgatcacctgggcgccaacccgc
gaacaagccagcgctgcgcttgacaaggccctggccgactcggtgctttatggcgtggaa
tgcaaccgcgattacctgcgccagatcctcagcgacgcgcctttcgccagcggctcgccc
tggacccgctgcctggagaacctggcctaccaggccacgaccttcgaggtgctgagcgcc
ggcacccagaccaccgtgcaggatttccctggccgcattggctactgggccgtgggcgta
ccgccgtccgggccgatggacagccgcgccctgcgcctgggcaatcgtctgctcggcaac
gacgaaggcgccgctgcgctggaaatcaccatgagcggcccgctgctgcgcttcaacacc
gatgcggtgatagccgtcactggtgccgagattcccctgagcatcgatggcgtggaacag
ccgatgaacaccgcgctgctggtcaaagccggcagcaacctgacgctcggcaccattgcc
ggtgccggcgcgcgtagttatctgagcattcgtggcggcattcaggtgccggattacctg
ggcagcaaaagcaccttcacccttggccagttcggcggccatggcggccgcgccctgcgc
gccggggacgtgctgcatattccggcgttggcggatcgccaggccggcaaccagctgcct
gcggagctatatcctgccctgcccacggtgcgcgaaatccgcgtgatctacggcccccat
ggcgcaccggaatacttcacgcccgcctatatcgacaccttcttcgccaccgcctgggaa
gtgcacttcaactccagccgcaccggcgtgcgcctgatcgggcctaagcccgagtgggtg
cgcgagagcggcggcgaggccggcctgcacccctccaatatccacgacaacccctacgcc
atcggcgcggtggacttcaccggcgacatgccggtgatcctcggcccggacggcccgagc
ctgggcggcttcgtgtgcccggtgaccatcatcgaagccgacctctggcagctcggccag
ctcaaggccggcgacaaggtgcgcttcgttccggtggatatcgccacggctcgggagttg
gccaaagcaagtgccagcgaatgcaacactctccgtgggagcggcttcagccgcgatgca
ggcggcaccgaaatcgcggataaatccgctcctacagacacgaccgtagcccggatgcaa
tccggggaaatcgcagcgcctgagtcccggattgcatccgggctacaaccccccatcgtc
ctcgacctcggcgaaggtgacacccgcctggtcgcgcgcctctccggcgacacccacctg
ctgctggaaatcggccagccggaactggatctggtgctgcgtttccgcggccatgcgctg
atgcaggcactcgaagccaagaggctcgacggcgtgatcgacctgacgcccggcatccgc
tcgctgcaggtgcactaccagccggaaaccctggcgctgcacgaactgctggatatcgtc
gccggcgagtgggacgctgtctgcgctgcgcgcgacctcaaggtgccgtcgcgcatcgtc
cacctgccactgtcctgggacgacccggcctgccagctggccatcgagaaatacatgacc
accgtgcgcaaggacgcgccctggtgcccgagcaacctggagttcatccgccgcatcaac
gacctggaaaatctcgatgaggtgtaccgcaccgtgttcgatgccagctacctggtcatg
ggcctgggtgacgtctacctcggtgcgccagtggccacgccgctcgacccgcgccaccgt
ctggtgaccaccaagtacaacccggcgcgcacctggaccgccgaaaactccgtcggcatc
ggcggcgcctacatgtgcgtatacggcatggaaggccccggcggttaccagttcgttggt
cgcaccctgcagatgtggaaccgctaccgcgaggttgcggcctttggcggcaagccctgg
ctactgcgcttcttcgaccagatccgcttctacccggtcagtgccgacgagctgctgcgc
atccgccgcgacttcccgctgggccgctttgacctgcgtatcgaggaaagcgagctggca
ctggccgactaccagcagttcctcactgacgaagccgacggcatcgccgccttccgcgat
cagcagcgcaccgccttcgccgccgaacgccagcgctggatcgactccggtcaggcgcat
ttcgaaagcgatgaaggcgtggccgaggagaccgaagatgccccgctcggcgcgggtcag
tgcagcgtcaacagccacatcgccggcaacctctggcaggtgcaggtcgaggccggtgcc
agggtggaggccggcgacgtgctggtgattctggaatccatgaagatggaaatcccgctc
actgcgcccatggccggcacagtacgcgaagtgcgcgtgcagcccggctcgcccgtgcgt
cccgggcagcgcgtggtggtgctggaagaagcctga
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