Ectopseudomonas mendocina NK-01: MDS_1572
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Entry
MDS_1572 CDS
T01473
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmk03019
]
MDS_1572
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MDS_1572
Messenger RNA biogenesis [BR:
pmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MDS_1572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_25
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AEB57603
LinkDB
All DBs
Position
1716008..1720024
Genome browser
AA seq
1338 aa
AA seq
DB search
MTDLATLQKNLDHVMIAERHRLRRQLHELQKNPDEAKLAQWLERFQASSDKVAARRSSIP
AMRYDDALPIAAKRDEIKAALEKSQVVVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQ
PRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDGTLIKLMTDGILLAETQHDRFLE
KYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNDAPIIEV
SGRTYPVETWYRPLVAEVDEEGERLLDDLSIDQGILAALDEITEHERSVGKRPGDVLVFL
PGEREIREAAEVLRKANLRFTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAETSLTV
PGIRYVIDSGTARISRYSYRAKVQRLPIEPVSQASANQRKGRCGRVEPGICIRLYSEEDF
LGRPEFTDPEILRTNLAAVILQMLHLRLGSIEDFPFIEPPDGKAISDGFNLLQELSAVNR
ESQLTPIGRQLARLPIDPRLGRMVLEGARQGSLEEILIVAAALSVQDPRERPMDRQQAAD
QAHAQWKDVDSDFAALINLWRGFEEKRQELGSNPLRTWCKKNFLNYMRLREWRDAHRQLV
LIARDLQLLGKGGQSRTEAKGEQTANTPQPTKDTRVNAIARQQAEASEAAVRAKNYAAVH
KAILAGLLSQIGQKTEEGDYLGARQRRFWIHPSSVIGRKKPNWVMAAELVETTKLFARMV
AKIEPDWIEPLAAHLVKKNHLEPHWEKKRGQVVAYEQVTLYGMIIVGRRPVHYGPIDPPV
AREMFIREGLVRGEINSRVRCLTANRQLLERLDELEAKSRRRDILADEETLFGYYEARIP
QDIYQAASFESWYKKGSATDAQLLIMREEDALARDAKEVTAAQYPDTLRIGELQLPLSYH
FEPNHPRDGVTLRVPAPLLPQLQPERLEWLVPGLLEAKCVALVRGLPKALRKNFVPVPDF
VGAALDKLVFGQGSLPQALGAELLRMTGARVSDEAWAEAAESIENHLKMNIEVVDAKGKF
LGEGRDLAELTARFAEASQAALAIPQQSDKPKAVEAKAFAEVAEKAQQKIAGLSMTVYPA
LVEEAGVVKEGRFPTQAEADFQHRRALQRLLLQQLAEQAKFLRGKLPGLTELGLLYRDIG
RVEALVEDILLASLDACILEGEVTLPRDGAALAQLAERKRGDWTAHAERIARQVLEILKL
HHGLQKRFKGKIDLAQAMALNDIKQQLAGLVYAGFVRETPGEWLKEIPRYLKAIEQRLDK
VGAQVQRDRVWTGELAGYWEQYKARAAKHAQEGKRDPELTLYRWMLEEYRVSLFAQQLGT
KMAVSDKRLSKQWTLVEG
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctcgccacgctgcagaagaacctcgaccacgtcatgatcgccgagcggcat
cgcttgcgccggcagttgcatgagctgcagaagaaccccgacgaggccaagttggcgcag
tggctggagcgttttcaggcgtccagcgacaaggtggcggcgcggcgtagtagcatcccg
gcgatgcgctacgacgatgcgctgccgattgccgccaagcgcgacgagatcaaggccgcg
ctggagaagagccaggtggtggtgatcgccggcgagaccggctcgggcaagaccacgcag
ttgccgaagatctgcctggagattggccggggtgtgcatgggctgatcggccatacccag
ccgcgccgtctggcggcgcgcagtgtggcgacgcgggtggcggaagagatcggtacgccg
ctgggcgagctggtcggttatcaggtgcggttcgaggatcagagcaaggacggcacgctg
atcaagttgatgaccgacggcatcctgcttgccgagacccagcacgaccgctttctggaa
aagtacgacaccatcatcgtcgacgaggcgcacgaacgtagcctcaatatcgattttttg
ctcggctacctgaagaccctgctgccgcgtcgcccggatctgaagctgatcatcacttcg
gcgaccatcgatctggagcggttcagtaagcacttcaatgacgcgccgatcatcgaggtg
tccggccgcacctacccggtggaaacctggtatcgcccgttggtggccgaggtggacgag
gagggcgagcgtctgctcgatgacttgtccatcgaccagggcattctcgctgcgctggac
gagatcaccgagcacgagcgcagcgtgggcaagcgccccggcgacgtgctggtgttcctg
cccggcgagcgcgagattcgtgaggcggccgaggtgctgcgcaaggctaacctgcgtttt
accgaggtgctgccattgtatgcacggctgacgccggccgagcagcagaagatcttcgcg
cccatgccggggcgcaagatcgtgctggccaccaacgttgcggaaacctcgctgaccgtg
ccgggcatccgctatgtgatcgacagcggcaccgcgcgcatcagccgctacagctaccgc
gccaaggtgcagcggctgcccatcgagccggtgtcgcaggccagcgccaaccagcgcaag
ggccgttgcggccgggtcgagccgggcatctgcattcggctgtacagcgaggaggatttt
ctcgggcgccctgaattcaccgacccggagattctgcgcaccaacctggcggcggtgatc
ctgcagatgctgcacctgcgcttgggcagcatcgaggacttcccctttatcgagccgcca
gacggcaaggccatcagcgacggcttcaacctgttgcaggagctgtcggcggtcaaccgc
gaaagccagctcacgcccatcggccggcaactggcgcgcctgcccatcgacccgcgcctg
gggcgcatggtgctggagggcgccaggcagggcagcctggaggaaatccttatcgtcgcc
gccgcgctgtcggtgcaggatccgcgcgaacgaccgatggatcgccagcaggccgccgac
caggcgcatgcgcagtggaaggatgtggattcggacttcgccgcgctgatcaacctgtgg
cgcggcttcgaggaaaaacgccaggagctgggcagcaacccgctgcgtacctggtgcaag
aagaacttcctcaactacatgcgcctgcgcgaatggcgcgacgcgcaccgacagttggtg
ctgattgcccgtgatctgcaactgctgggcaagggcggccagagccgtacggaggcgaag
ggcgagcaaacggcgaacacgccgcagccgaccaaggacacccgcgtcaacgccatcgcc
cgtcagcaggccgaggccagcgaggcggcggtgcgggcgaagaactatgcggccgtgcac
aaggcgattctcgccggcctgctcagccagatcggccagaagaccgaggagggcgactac
ctcggcgcgcgccagcggcgtttctggattcacccgtcgagcgtgatcgggcgcaagaag
cccaactgggtgatggccgccgagctggtggaaaccaccaagctgttcgcccgtatggtg
gcgaagatcgagccggactggatcgagccgctggcggcgcatctggtgaagaagaaccat
cttgaaccgcattgggagaagaagcgcggccaggtggtggcgtacgagcaggtcaccctg
tacggcatgatcatcgtcggtcgccgcccggtgcattacggccctatcgatccgccggtg
gcgcgcgagatgttcattcgcgaggggctggtgcgtggcgagatcaacagccgcgtgcgc
tgcctgaccgccaaccgccagttgctcgaacgcctcgacgagctggaggccaagtcgcgc
cgccgcgacatcctcgccgacgaggaaaccctgttcggctactacgaggcgcgtatcccg
caggacatctaccaggccgccagtttcgagagctggtacaagaagggcagcgccacggat
gcgcaactgctgatcatgcgcgaggaagatgccctggcccgtgatgccaaggaagtcacc
gctgcgcagtacccggacaccttgcgcatcggcgagctgcaactgccgctgtcctaccac
ttcgagcccaaccacccgcgtgatggcgtgaccctgcgcgtgccggcgccgctgttgccg
caactgcaacccgagcgcctggaatggctggtgccggggctgctggaggccaagtgcgtg
gcgctggtacgcggcctgcccaaggcgctgcgcaagaacttcgtgccggtaccggacttc
gtcggcgccgcgctggacaagctggtgtttggccagggttcgttgccgcaggcccttggt
gccgagctactgcgcatgaccggcgcgcgggtgtccgacgaggcctgggcggaagcggct
gaaagcatcgaaaaccacctgaagatgaatatcgaggtggtggatgccaagggcaagttc
ctcggtgaaggtcgtgacctggccgagctgaccgcacgtttcgccgaggccagccaggct
gccttggccatcccgcagcagagcgacaagccgaaagcggtggaggccaaggccttcgcc
gaagtggccgagaaggcgcagcagaagatcgccggcctctccatgacggtctacccggcc
ttggtggaggaggctggggtggtcaaggaagggcgcttcccgacccaggccgaggccgac
ttccagcatcgtcgtgcactgcaacgtctgctcttgcagcaactggccgaacaggccaag
ttcctgcgcggcaagctgccggggctgaccgagctgggcctgctctatcgcgatatcggc
cgcgtcgaggcgctggtggaggacattctgctggccagcctggatgcctgcatcctcgag
ggcgaagtcacgctgccacgcgacggcgcggccctggcgcaactggctgaacgcaagcgt
ggcgactggacggcgcatgccgaacgcatcgcccgccaggtgctggaaattctcaagctg
caccatgggctgcagaagcgtttcaagggcaagatcgacctggcccaggcgatggcgctc
aacgatatcaagcagcagctcgcgggcctggtgtatgccggcttcgtgcgcgagacgccg
ggggagtggctcaaggaaattccgcgttatctgaaggccatcgagcagcgcctggacaag
gttggcgcgcaggtacagcgtgaccgcgtatggacgggcgaactggctggctactgggag
cagtacaaggctcgcgctgccaagcatgcccaggaaggcaaacgtgatccggagctgacg
ctgtaccgctggatgctggaggaataccgcgtgtcgctgttcgcccagcaactgggcact
aagatggcggtgtcggacaagcgcctgagcaagcagtggacgctggttgaaggttga
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integrated database retrieval system
