Ectopseudomonas mendocina NK-01: MDS_1645
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Entry
MDS_1645 CDS
T01473
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MDS_1645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_1645
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MDS_1645
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MDS_1645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
AAA_22
DUF7267
Motif
Other DBs
NCBI-ProteinID:
AEB57676
LinkDB
All DBs
Position
complement(1792480..1795917)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPIATALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPY
RIDLFDDEIETLRTFDPENQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSSGITPAGIEYYLPLFFEETGTLFDYLPSDTQVFSLPGIEKAAEQFWLDARN
RYEDRRVDPERPLLPPADIFLPVDECFARLKNWPRVVVNQDDIEPGVGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYQGRVLFCAESAGRREVLLELLARLKLKPKEVDGWPTFAES
QERLNICIAPLDEGLLLDELALIPENPLFGQRVMQRRRREKGRDGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYSGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPAVDYATFSAGFPFEE
TPDQQTAIDAVRNDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQDDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEENKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKSMTEDAQKRLEAIAGAQDLGAGFILATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
ARLILYKRIASATDEDGLKELQVEMIDRFGLLPEPTKHLMRLTLLKLQAEKLGITKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALFER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctgccggccagcgccggcaaacagcaatggggcaat
ctgcccggcgccgccctctctctggcgatagccgaagcggccagcaatgccgggcgtttc
accctggtattgaccgagggcagccagagcgccgagcgcctgcaggaagaactggccttc
ttcgccccggacctgccggtgctgcatttccccgactgggaaaccctgccctacgacgta
ttctcgccgcaccaggacatcatctcccagcgtatcgccgctctgtatcggctaccgcaa
ctgagccgcggcattctcgtagtgccgatcgccactgccctacaccgcctggcgccgaag
cgcttcctactgggtagcagcctggtgctggatgtcggccagaagctggatgtggagcag
atgcgcacgcgccttgaggccgccggctaccgctgcgtagatacggtgtacgagcacggt
gaattcgccgtgcgcggcgcgctgatcgacctcttcccgatgggcagcgacacgccctac
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcaccttcgacccggaaaaccaa
cgctcggtggacaaggtcgagtcgatccgcctgctgccggcgcgcgaattcccactggag
aagaaagccgtcaccgatttccgcgggcgctttcgcgagcgtttcgacgtggattttcgc
cgttgcccgatctatcaggatctctcgtccggcatcaccccggctggcatcgagtactac
ctgccgctgttcttcgaagaaaccggcaccctgttcgactaccttccgagcgacacccag
gtgttctccctgccgggtatcgagaaagccgccgagcagttctggctggatgcgcgcaac
cgctatgaagaccgccgcgtcgacccggaacgcccgctgctgccgccggccgacatcttc
ctgccggtagacgaatgcttcgcgcgcctgaagaactggccgcgcgtggtggtcaaccag
gacgatatcgaacccggcgtcggtcagacccgcttcgacgcccgcgccctgcccgacctg
gccatccaggccaaggccggcgagccgctggcggcgctgcgccgcttcatcgaggaatat
cagggccgcgtgctgttctgcgccgagtcggccggtcgccgcgaagtgctgctggaactg
ctcgcccgcctcaagctcaagccgaaagaagtcgacggctggccgacgtttgccgaaagc
caagagcgcctgaacatctgcatcgcgccgctggatgagggcctgctgctcgacgaactg
gcgctgatcccggaaaacccgctgttcggccagcgcgtgatgcagcgtcgtcgtcgcgaa
aaaggacgcgacggcggcgacaacgtgatcaagaatctcaccgaactgcgcgaaggtgcg
ccggtggtgcatatcgatcacggcgtcggccgctacctgggcctggtaaccatggaattc
gacggccaggctgccgaattcctcgccctgcagtacgccgacgaggccaagctctacgtg
cctgtggccagcctgcacctgatcgcccgctacagcggcagcgacgatgccctggcccca
ctgcaccggctcggctcggaagtctggcaaaaggccaagcgcaaggccgccgaacaggta
cgcgacgtcgccgccgaactgctcgacatctacgcccgccgcgccgcccgcgaaggtttc
gccttccaggacccggccgtcgactacgccaccttcagcgccggcttccccttcgaggaa
accccggatcaacagaccgccatcgacgccgtgcgcaacgacatgctcgccggcaagccg
atggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggccatgcgcgcc
gccttcatcgccgtgcacagcggcaagcaggtggccgtactggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggttgaa
gtcatgagccgtttcaagagcgccaaggaagtcgaaggcgccgtacagcagttggcagaa
ggcaaggtggacatcgtcatcggcacccacaagctgctgcaggacgatgtgaaattccac
aacctgggcctggtgatcatcgacgaggaacaccgtttcggcgtgcgccagaaggaacaa
ctcaaggcactgcgcagcgaagtggatatcctcaccctcaccgccacgccgatccccaga
acgctgaacatggccgtggccggcatgcgtgacctgtcgatcatcgccacgccgccggcg
cggcgcttgtcggtgcgcaccttcgtcatggaggagaacaagccgaccatcaaggaagcg
ctgctgcgcgagctgttgcgtggcggccaggtgtactacctgcacaacgacgtgaagacc
atcgagaaatgcgccgccgatctggccgaactggtgcccgaggcacgcattggcatcggt
cacgggcagatgcgcgaacgcgatctcgaacaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtacccagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcccagctgcaccagttgcgcggc
cgcgtcggtcgtagccaccaccaggcctacgcctatctgctcacgccgccacgcaagagc
atgaccgaagacgcccagaagcgtctggaagccatcgccggcgcgcaggatctcggcgct
ggcttcatcctggccacgcacgatctggaaatccgtggcgccggcgaactactcggcgac
ggccagagcgggcagattcaggccgtcggcttcaccctgtacatggaaatgcttgagcgc
gcggtcaaggctatccagaaaggcgaacaacccaaccttgaccaaccgctgggtggcggc
ccggagatcaacctgcgcgtgccagccctgatccccgaggactacctccccgacgtgcat
gcccgcctgatcctctacaagcgcatcgcctcggctaccgacgaggatggcttgaaggag
ctgcaggtggagatgatcgaccgcttcggcctgctaccagagccgaccaagcacctgatg
cgcctgaccctgctcaagctgcaggcagaaaagctcggcatcaccaaggttgacgccggc
ccacaaggcggccgcatcgagttcgccgcagaaacctgcgtcgacccgctgacgctgata
aagctgatccaggcccaaccgaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgcccatggagcgcgcggaagagcgcttcaataccctggaagccctgttcgagcgc
ctcgcgcccaccacctga
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integrated database retrieval system
