Ectopseudomonas mendocina NK-01: MDS_1673
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Entry
MDS_1673 CDS
T01473
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDS_1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmk03019
]
MDS_1673
03009 Ribosome biogenesis [BR:
pmk03009
]
MDS_1673
Enzymes [BR:
pmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MDS_1673
Messenger RNA biogenesis [BR:
pmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MDS_1673
Ribosome biogenesis [BR:
pmk03009
]
Prokaryotic type
rRNA processing factors
MDS_1673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AEB57704
LinkDB
All DBs
Position
complement(1819800..1822850)
Genome browser
AA seq
1016 aa
AA seq
DB search
MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE
RHGFLPLKEISREYFSKAPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFISLAG
RYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQWDL
DYLLQLWSAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFI
QQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDIN
SARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRE
ALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILR
LIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEV
QRLRDDSPEALSGQTSYEIAATAENEEAAAHPAAATRTLVRQEAAIKAAPRSSAPVAAEP
QPAPLAPTKSPEPSLFKGLVKSLVSLFAGKEEEAQPAVTEKKSSERPPREERRNGRQQSR
NRGGRRDDERKSREERVPREERQAREPREERQPREERQPREERAPREPREGQENRRERKP
REERAPREERVRELREPLEAASNEQREERAERQPRGERQERQRPPREERQPRAEQAEALQ
DEALPNEEQLQDDEQDNNDGERPRRRSRGQRRRSNRRERQRDADGNLIESAENSEAAGNE
AQAAAPAAIATAAAVVAESVDSSEAVASEAPISEAPATEVPVAQAEEAPAAQVVEAQAEA
SVREREVVETAPVAEKEAEAAAVATPAAVEEPPAEPVVQAEPTVAVAQEEPVPAPVEQAP
AAAPVPANATGRAPNDPREVRRRQREAERLAREAAQAAAAAPAVEAAPVVDAAPVAEASA
PAEAEAAAVETAPAVEPVAEAETTSVVSEQSVSEAVEQAQPEEETPADKEEVKPQA
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgctcattaacgcaactcagcccgaagagttgcgtgttgccctggtagatggccaaaaa
ctctacgatctggacatcgagtccggcgcccgcgaacagaagaaggccaatatctacaaa
ggccgtatcacccgcgttgaacccagccttgaagccgccttcgtcgatttcggttccgaa
cgccacggcttcctccccctcaaagaaatctcccgcgaatacttctccaaagcccctgaa
ggcggccgcgtcaatatcaaggacgtgctcaaggaaggccaggaagtcatcgtccaggtc
gagaaggaagaacgcggcaacaagggcgcggccctgaccaccttcatcagcttggccggt
cgttacttggtgctgatgccgaacaacccacgtgccggcggcatctcccgccgcatcgaa
ggcgaagagcgcaacgaactgcgcgaagcgctgaacggcctcaacgctccggccgatatg
ggcctgatcgtccgcaccgccggcctcggtcgctccagcgaagaaatgcagtgggacctc
gactacctgctgcaactgtggagcgcgatcaaggaagcctccaccagccgccctgccccg
ttcctgatctaccaagaatccaatgtcatcatccgcgccatccgcgactacctgcgccag
gacatcggcgaggtactggtcgacagcgtcgaagcccaggaagaagccctgagcttcatc
cagcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctg
ttcaaccgcttccagatcgagagccagatcgaaaccgccttccagcgtgaagtgaaactg
ccgtccggcggctccatcgtcatcgacccgaccgaagcactggtttccatcgacatcaac
tcggcgcgcgccaccaagggcagcgacatcgaggaaaccgcgctgcagaccaacctggaa
gcggccgaggaaatcgcccgccagctgcgtctgcgtgacatcggcggcctgatcgtcatc
gacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagagaaggtgcgtgaa
gccctggaagccgaccgtgcccgcgttcaggtcggccgcatctcgcgcttcggcctgctg
gaaatgtcccgtcagcgcctgcgtccgtccctgggcgagaccagcggcatcgtctgcccg
cgctgcaacggccaaggcatcatccgcgacgtggaatccctgtcgctggccatcctgcgc
ctgatcgaagaagaagcgctgaaggatcgcaccgccgaagtccgcgcccaggtgccgatc
ccggtcgccgccttcctgctcaacgagaagcgcaactcgatcaccaagatcgaactgcgt
acccgtgcgcgcatcgtgatcctgcccaacgatcacctggaaaccccgcatttcgaagtg
cagcgcctgcgtgacgacagcccggaagcgctgagcggccagaccagctacgaaatcgcc
gccaccgcggaaaacgaggaagctgccgctcatccggccgccgccacgcgcaccctggtt
cgccaggaagccgcgatcaaggctgcgccgcgcagcagcgctccggttgccgccgagccg
caaccggctccgctggctccgaccaaatcgcctgagccgagcctgttcaagggcctggtg
aagtccctggtcagcctttttgccggcaaggaagaagaagcccagccagctgtgaccgag
aagaagagcagcgagcgcccgccgcgcgaagaacgccgcaacggtcgtcagcagagccgt
aaccgtggcggtcgccgcgatgacgagcgcaaatcccgtgaagaacgtgtcccacgtgaa
gagcgccaggctcgtgaaccacgcgaggaacgccagccgcgtgaggagcgtcagccgcgt
gaagaacgcgccccgcgcgagccgcgcgaaggccaggagaaccgtcgcgagcgcaagcca
cgcgaagagcgtgccccgcgtgaagagcgcgtgcgcgagctgcgtgagccgctggaggcg
gccagtaacgagcaacgcgaagagcgcgccgagcgtcagccacgtggcgagcgccaggaa
cgtcagcgtccgccgcgcgaagagcgtcaaccgcgtgccgagcaggccgaggccctgcag
gatgaagcgctgccgaacgaagagcagctgcaggatgacgagcaggacaacaacgacggc
gaacgtccgcgtcgccgctcccgtggccagcgtcgccgcagcaaccgtcgagagcgtcaa
cgtgatgccgacggcaacctgatcgaaagcgccgagaacagcgaagccgcaggcaacgaa
gcgcaagccgccgctcccgctgccatagccactgctgccgccgtggttgcagaaagcgtc
gacagcagcgaagccgttgccagcgaagctccgatcagcgaagcaccggccaccgaagta
ccggtagctcaggctgaagaagcacctgccgctcaagtggtcgaggcacaagccgaggct
agcgtgcgcgaacgcgaagtggtcgaaaccgctccggtcgcagagaaggaagcagaagcg
gccgcagttgcaacccctgctgccgtcgaagagccacccgccgagccggtcgttcaagct
gagccgactgtcgcagtcgcccaggaggagcctgttccggcgccagtcgagcaagcacct
gctgctgcaccggttccggcaaatgccaccggccgcgcgccgaacgacccacgtgaagtg
cgtcgtcgtcagcgtgaagccgagcgtctggcccgcgaagctgctcaagccgctgctgca
gccccggctgtagaggctgccccagtagtcgacgccgctccggtcgctgaagcaagcgcc
ccggcagaagccgaagccgctgcagtcgaaaccgctcctgcggtggagccggtcgctgaa
gccgaaaccacctctgtcgtcagcgaacaaagcgtgagcgaagcggtagagcaagcgcag
ccggaagaagaaacgccagccgacaaggaggaggtcaagcctcaggcttga
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