Ectopseudomonas mendocina NK-01: MDS_1900
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Entry
MDS_1900 CDS
T01473
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmk03032
]
MDS_1900
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_1900
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MDS_1900
DNA replication proteins [BR:
pmk03032
]
Prokaryotic type
DNA Topoisomerases
MDS_1900
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MDS_1900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Acetyltransf_5
Motif
Other DBs
NCBI-ProteinID:
AEB57931
LinkDB
All DBs
Position
complement(2078829..2079845)
Genome browser
AA seq
338 aa
AA seq
DB search
MPGDIDLPPDLRYVDDSMPGISRRKLRGKFCYFDSQGQRIRDKQEVARIDALAVPPAYTD
VWICPFPNGHLQATGRDARGRKQYRYHARWREIRDADKYASLLAFGKALPALREALRQHL
SLREHRREKVLATVIMLLDNTLIRVGNARYARENRSYGLTTLRNRHVEVQGSTIRFHFRG
KSGIEHEVQVSDRRLARIIQRCLELPGQHLFQYLDEDGERRAVTSTDINDYLRELTGADF
TAKHYRTWAGSALALTLLRELEWQPESAAKKHVVAMVKQVAEQLRNTPAVCRKCYIHPAL
LEAFQAGELAGIRMATPRKGLRAEESLLMRFLEKLPPA
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgcctggcgatatcgatctaccgcccgacctgcgctatgtcgacgacagcatgccgggc
atcagccgccgcaagctacgtggcaagttctgctatttcgacagccagggccagcgtatc
cgcgacaaacaggaggtggcgcgcatcgatgcactggctgtgccacccgcctataccgat
gtgtggatctgcccatttcccaacggccacctgcaggcaacaggccgcgatgcccgcggg
cgcaagcaataccgctaccacgcgcgctggcgcgaaatcagggatgcggacaagtacgcc
agcctgctggcattcggcaaggcactgccagcactgcgtgaagccctgcggcagcacctg
agcctgcgcgaacaccgccgtgagaaagtgctggccaccgtgatcatgctgctggataac
accctgatccgggtcggcaacgcccgttacgcgcgggagaatcgttcctatggcctgacc
accctgcgcaaccgtcacgtcgaggtgcaaggcagcacaattcgctttcacttccgtggc
aagagcggtatcgaacacgaggtgcaggtcagtgaccgccgcctggcccgcatcatccag
cgttgcctggaattgcccgggcaacacctgttccagtacctggacgaggatggcgaacgc
cgcgccgtgacctccaccgacatcaacgactacctgcgtgaactgaccggcgccgacttc
accgccaagcactaccgcacctgggccggcagcgcgctggccctgacgctgctgcgcgag
ctcgagtggcagccggaaagcgcggccaagaaacatgtggtggccatggtcaaacaagtg
gctgagcaattgcgcaatacgccggccgtctgccgcaagtgctacatccatcccgccttg
ctcgaagccttccaggccggcgagttggccggcattcgcatggcaacgccgcgcaagggc
ctgcgcgcggaagaaagcctgttgatgcgctttctggagaaactgccacccgcttga
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