Ectopseudomonas mendocina NK-01: MDS_2578
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Entry
MDS_2578 CDS
T01473
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDS_2578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmk03019
]
MDS_2578
03009 Ribosome biogenesis [BR:
pmk03009
]
MDS_2578
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MDS_2578
Messenger RNA biogenesis [BR:
pmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MDS_2578
Ribosome biogenesis [BR:
pmk03009
]
Prokaryotic type
rRNA helicases
MDS_2578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
AAA_22
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AEB58609
LinkDB
All DBs
Position
complement(2828766..2830448)
Genome browser
AA seq
560 aa
AA seq
DB search
MTQEIGGFAALGLHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAF
ALPLLSKIDPAKREPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLK
AIRQGAQIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPES
RQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLL
EVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNAQQVLDARIKKLTSSLAPLVADAEASHGDLLDRLTADIGCSPRAL
AAALLKKATNGQALDLASVEREQPLVPGVGGAPRERRERDGDRGGERGEYRERRAPMPLA
EGRVRCRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEDGLDRLLG
KLKDTRVAGKALKLRRYRED
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgcgctcggacttcaccccaatattctcgccgct
ctgaccgccgtcggttacgaagagccgtccccgatccagtcgcaggccattccggtgatt
ctcgccggccacgacatgatcggccaggcgcagaccggcaccggcaagaccgcagctttc
gcgctgccgctgctgagcaagatcgaccctgccaagcgtgagccgcaggtgctgatcctc
gctccgacccgcgagctggccctgcaggtggccaccgccttcgaaacctactccaagcag
atgccgggcgttaacgtcgtcgcggtctatggtggcgcgccgatgggcccgcagctcaag
gccatccgtcagggcgcgcagatcatcgtcgcgaccccgggccgtctggtcgaccacctg
cgtcgcgacgagaaggtgctgtccaccatccagcacttggtgctcgacgaagctgacgag
atgctcaaactgggcttcatggacgatctggagatcatcttcgaagccatgccggaaagt
cgccagagcgtgctgttctccgccacgctgccgcattcgatccgcgccatcgccgagaag
cacctgcgcgagccgcagcacatcaagatcgctgccaagacccagaccgtctcgcgcatc
gagcaggcgcacctgatgattcacgccgaccagaagaccaacgccgtgttgcgcctgctg
gaagtcgaggatttcgatgctctgatcgccttcgtgcgcaccaagcaggccactctggat
ctggcctccgcgctggaagccaagggcttcaaggccgctgcgctgaacggcgacattgcc
cagaaccagcgcgagcgcgttatcgagtcgctcaaggatggtcgtctggacatcgtcgtt
gcgactgacgttgctgctcggggtatcgacgtgccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgaccccgagtcctacgtgcaccgtatcggccgtaccggccgcgccggt
cgcgatggccgtgcgctgctgctggtgactccgcgcgagcgtcgcatgctgcaggtgatc
gagcgtgtcaccgggcagaaagtgggcgaagtgaagctgccgaacgcccagcaggtgctc
gatgcccgcatcaagaagctgaccagcagcctggcgccgctggtggctgatgccgaagcc
agccatggcgatctgctcgaccgactgaccgccgacatcggttgcagcccgcgcgccctg
gccgccgcactgctgaagaaggccaccaacggccaggcactggatctggccagcgtcgag
cgcgagcagccgttggtgccgggtgtgggtggtgcgccgcgtgagcgtcgcgagcgtgat
ggtgatcgtggcggtgagcgcggtgaataccgcgagcgtcgtgcgccaatgccgctggcc
gaaggtcgtgtgcgctgccgtaccgcgttgggcactcgcgacggcattgccgcgaagaac
ctgctgggcgccatcctcaacgagggcggcctggcgcgtgaagccatcggtcgcattcag
atccgcgagaccttcagcctagtcgagctgccggaagacggcctggatcgtctgctcggc
aagctgaaagacacccgtgtggccggcaaggcgctgaaactgcgtcgctaccgcgaggat
tga
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