Ectopseudomonas mendocina NK-01: MDS_2731
Help
Entry
MDS_2731 CDS
T01473
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MDS_2731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_2731
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MDS_2731
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_Tnp_4
PhyR_sigma-like
HTH_31
HTH_11
PCI
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
AEB58762
LinkDB
All DBs
Position
2989905..2990423
Genome browser
AA seq
172 aa
AA seq
DB search
MSSVLPSSSLHGDIQRLYDNHHGWLKGWLRRRLGDRERAADIAQDTFLRLLVTRRMPEHG
EGRRFLAQIARNLVIDQWRRQRIEQAYLDSLAALPEPETPSLETRAMVIETLLQIDAMLD
SMPRKVREAFLLSQFEGLTYPQIAVRLEVSVSSVQKYMLRAIAACYQVLYAE
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagcgttttgccgtcctcatcgctgcatggtgatattcaaaggctctacgacaat
caccatggctggctgaaaggctggttacgtcgtcgactgggtgatcgcgaacgagccgcc
gacattgcccaggacaccttcctgcgccttctggtgacacggcgtatgccagaacatggc
gaaggtcgccgttttcttgcacagatcgcccgcaacctagtcatcgaccagtggcgtcgg
cagcgcatcgagcaagcctatctggacagcctggccgccctgcccgaacccgaaaccccg
tcgctggaaacccgcgcgatggtcattgaaaccttgctgcagatcgatgccatgctcgac
agcatgccgagaaaagtgcgtgaggccttcttgctgtcacagttcgaaggcctgacctac
ccacagatcgcagtgcgactggaggttagcgtcagctcggtgcagaagtacatgctgcgt
gccatcgccgcctgttaccaggtgctttacgcagaatga
DBGET
integrated database retrieval system
