Ectopseudomonas mendocina NK-01: MDS_2770
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Entry
MDS_2770 CDS
T01473
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MDS_2770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_2770
Enzymes [BR:
pmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MDS_2770
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MDS_2770
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
TraI_hel_assoc_N
SLFN-g3_helicase
nSTAND3
AAA_17
DEAD
AAA_28
Mg_chelatase
NTPase_1
AAA_7
ATPase
AAA_25
AAA_29
PhoH
T2SSE
AAA_18
NACHT
TrwB_AAD_bind
AAA_5
LTM
GvpD_P-loop
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AEB58801
LinkDB
All DBs
Position
complement(3045122..3047152)
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AA seq
676 aa
AA seq
DB search
MSTTLAPALLDRAELFALLSTWSERGWLRELDRALAQLFAELDPQASPLLLLGAALASHQ
LGRGHVCLDLAATLANPDFTLSLPPEGDDVEESMILPSQVLAGLSLESWLAACAGSALLE
SEGAPLVLSGTCLYMRRYWNYERQVAYNIAQRLQTSAAAPTDLAARLASLFPEALMVSGQ
RLTDWQKLACAMAAQGRFTLITGGPGTGKTTTVVRLLALLQEAAMATGEPLRLSLAAPTG
KAAARLTESIGAQVQSLALDERVREQIPTLVTTLHRLLGSRPGSRHFRHDATNPLPLDVL
VVDEASMIDLEMMASLLDALPTHARLILLGDKDQLASVEAGAVLGDLCREAESGGYSEAT
RVWLESQTGERLDDPALVISDKALAQHIVMLRHSRRFGSGSGIGRLARAVNQGDAQMARA
TLAGGADDLHVLRLSGEQDRGLGRLLIDGQGAGESRPQGYAHYLQVMQAQRPTSDAGEQA
WDEWAGKVLAAFDQFQLLCAVRKGAWGVEALNERIAEALVRRKLLEQAYGWYEGRPVLVT
RNDYSLGLMNGDIGIALRLPEPPESPGAPVREVLRVVFPRNDGSGTLRHILPSRLSAVET
VFAMTVHKSQGSEFAHCALILPDSLNPVLTKELVYTGITRARHWFSLIESRAGIFEQAVQ
RRVERRSGLREALEAL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgactcttgcgccagcgctgcttgatcgcgctgaactcttcgccctgctttcc
acctggagcgagcgtggctggttgcgcgagttggatcgggcgctggcgcagctgttcgcc
gagctggatccgcaggcttcaccgctgcttctgctcggtgccgcgttggccagtcaccag
ttgggtcgggggcatgtctgcttggatctggcagccaccttggccaacccggacttcact
ctatccctgccaccggagggggatgatgtggaagagtcgatgatcctgccgtcccaggtg
ctggcgggactcagcctggaatcctggttggcggcctgtgccggcagcgcgctgctggag
tccgaaggtgcgccgttggtgcttagcggcacttgcttatatatgcggcgttactggaac
tacgagcgccaggtggcctacaacatcgcccagcgtctgcagacgagcgctgcagcaccg
accgatctggccgcgcgccttgcttcactctttcccgaggcgctgatggtgagcggtcag
cgcctgaccgactggcagaagctggcctgcgccatggccgcacagggccgtttcacgctg
atcactggcgggccgggaaccggcaagacgaccacggtggtgcgcctgctggcattgttg
caggaagctgccatggccactggtgagccgctgcgcctgagcctggcggcgcccaccggc
aaggcggctgcacggttgaccgagtccatcggcgcacaagtacagtcgctggcgttggac
gagcgcgtgcgagagcagattccgacgctggtaacgacgctgcaccgcttgctgggcagt
cgtcccggcagtcgtcattttcgtcatgatgctactaaccccctgccgctggacgtgctt
gtagtcgacgaggcatcgatgatcgacctggaaatgatggccagcctgctggacgcactg
ccgacgcatgcgcgtctgattctgctgggtgacaaggatcagctcgcttcggtagaggct
ggcgcggtgttgggcgatctctgccgggaggcggagagcggtggctacagtgaggcgacg
cgagtctggctggaaagccagacgggcgagcggctggacgaccccgcactggtcattagt
gacaaggcgctggcccaacacattgtcatgctgcgtcactcgcgccgcttcggcagtggc
tcaggtatcgggcgtttggcgcgtgcggtgaaccagggcgatgcgcaaatggctcgtgcg
actttggcgggcggtgcggatgacctgcatgtgttgcgcctgtctggggagcaggatcgc
ggattgggacgtctcctcatcgacgggcagggcgccggtgagtcgcggccgcaggggtat
gcccattacctacaagtgatgcaggcgcagcgccccacgtcagatgcgggtgagcaagcc
tgggacgaatgggctggcaaggttttggcggcattcgatcagttccagttgctgtgcgcc
gttcgcaagggcgcctggggtgtggaggctctcaacgaacgtatcgccgaagcgctggtg
cgccgtaagctgctggagcaagcatatggctggtatgaggggaggccagtgctggtaacg
cgcaatgactacagcctgggattgatgaatggcgatatcggtattgcgctgcgcctaccg
gagccgcctgaatctccgggcgcgcctgtacgggaggtattgcgagtggtattcccgcgt
aatgatggtagtggcaccttgcgccacatcttgccgagtcgcctgagtgcggtggagaca
gtgttcgccatgaccgtgcacaagtcgcagggctccgagttcgctcattgcgcgctgatc
ctgcctgatagtctcaatccagtgctgaccaaggagctggtctataccggcatcacccgg
gcgcgccattggttcagccttatagagagccgtgccggcatcttcgagcaggctgtgcag
cgacgtgtggagcggcgtagcggtctgcgcgaggcgctcgaagcgctgtaa
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