Ectopseudomonas mendocina NK-01: MDS_3088
Help
Entry
MDS_3088 CDS
T01473
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmk03016
]
MDS_3088
Enzymes [BR:
pmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MDS_3088
Transfer RNA biogenesis [BR:
pmk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MDS_3088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AEB59119
LinkDB
All DBs
Position
complement(3411754..3412887)
Genome browser
AA seq
377 aa
AA seq
DB search
MANDIHWILDDAGLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPL
RISDWRPFAALLEAPNVVKVLHSCSEDLEVFLRLSGSLPAPLFDTQLAAGYLNLGFSMGY
SRLVQALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHLVEVYRALMARLAPQKVEWV
LEDGAELVANLSREVAPEDAWREAKLAWKLSRQQQAVLRALCAWREREARARNQPRNRVL
REHSLWPLARTQPDNLVALARIEDMHPKTVRQDGETLLKLIREAAALPPEQWPEALPEPL
PIEASALLKKLRAVGQREGERLDIVPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDCLAAEGESA
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggctaacgacattcactggattctcgacgacgccggcctggccgagcattgcgccgcc
tggcaggcgctgcctttcgtcgcgctggacaccgagttcatgcgcgtcgacacgttctac
cccatcgccgggctgctgcaggtcagcggcggcgacggcgcctatctgatcgaccccttg
cgcatcagtgactggcggcctttcgctgcgttgctcgaagcgccgaacgtggtcaaggtg
ctgcattcgtgcagtgaagacctggaggtcttcctgcgcctgagcggcagcctgccggcg
ccgctgttcgatacgcaattggccgcgggttatctcaacctcggtttctccatgggctac
tcgcgcctggtgcaggccctgctcgatatcgaactgcccaagggcgaaacgcgttccgac
tggctgcagcggccgctgtccgaactgcaggtgcgctacgccgccgaagacgtgctgcat
ctggtcgaggtgtaccgtgcgctgatggctcggctggcgccgcagaaggtcgagtgggtg
ctggaggatggtgccgaactggtggccaacctgagccgtgaagtggcgcccgaggatgcc
tggcgcgaggccaagctggcctggaaactgtcgcgtcagcaacaagcggtgctgcgcgca
ctgtgcgcctggcgcgagcgcgaggcgagggcgcgtaatcagccgcgtaatcgcgtgctg
cgcgagcattcgctgtggccgctggcgcgcacccaaccggataacctggtggcgctggcg
cgtatcgaggacatgcacccgaagaccgtgcgccaggatggcgaaaccctgctgaagctg
attcgcgaggccgcggcgctgccccccgagcaatggcccgaggccttgcccgagccgttg
ccgatcgaagcctcggcgctgctcaagaagctgcgcgccgtcggccagcgcgagggcgaa
cgcctggatatcgtgcccgagctgatgctgcgcaagaaaaccctggaggccctgctgaaa
agcggctttcccaatggtccgtaccaactgcccgattccctgcgtggctggcgtcgggaa
ttgatgggccaggctcttctggactgcctggccgctgaaggagaatccgcgtga
DBGET
integrated database retrieval system
