Ectopseudomonas mendocina NK-01: MDS_3249
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Entry
MDS_3249 CDS
T01473
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk00061
Fatty acid biosynthesis
pmk00071
Fatty acid degradation
pmk01100
Metabolic pathways
pmk01212
Fatty acid metabolism
pmk02024
Quorum sensing
pmk04146
Peroxisome
Module
pmk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
MDS_3249
00071 Fatty acid degradation
MDS_3249
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
MDS_3249
09145 Cellular community - prokaryotes
02024 Quorum sensing
MDS_3249
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pmk01004
]
MDS_3249
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmk04147
]
MDS_3249
Enzymes [BR:
pmk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
MDS_3249
Lipid biosynthesis proteins [BR:
pmk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
MDS_3249
Exosome [BR:
pmk04147
]
Exosomal proteins
Exosomal proteins of breast milk
MDS_3249
Exosomal proteins of breast cancer cells
MDS_3249
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AEB59280
LinkDB
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Position
complement(3598815..3600455)
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AA seq
546 aa
AA seq
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MTLQLPLERFNHWLHRQPDAIWLRQPVNGVWHDYSWRQVDDQARRLASALLALGCVPGER
VALLAKNCAEWFISDLAIQHAGLISVPLYPLQAPEQIAYVLEHAGCKVILLGKLDEPDKL
ASGIAPHITRIAMPYPTMPAEHQWQTLLAAHEPLPGTRLQRGEDLLSILYTSGTTGQPKG
VMLSAHAMGFSSANATAEMNMTPQDQFFSYLPLSHAAERFLVEFNSLYCGAPVAFVESLE
TFASDLRQVRPTVFFSVPRLWTRFQQGVLEKLPAHKLERLLRIPLLGRLVAHKVRAGLGL
DRTRILVSGAAAISTGLLEWYRRLGMTICEGYGMTEHFAYGCFNRPGQVRFGTVGRPMPN
LQVRIDAAGEILLRSETLMQGYYREPEKTGETLRDGWLHTGDRGQLDEAGYLRITGRVKD
IFKTSKGKYVAPAPIEGEIAKSHWVEQVCLMGCNLDQPLALIELSPAARQQSREALEQSL
TKHLHAVNLGLEPHERISHFYLVSEPWTVDNGSMTPTMKIRRNVLEVRYAEVIAGLSSDA
AIVWEA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgcaactgcctctcgaacgcttcaaccactggttgcaccgccagcctgacgct
atctggttacgtcagccggtcaatggtgtgtggcatgactacagctggcgtcaggtcgat
gatcaggcgcggcgtctggccagtgcgttgctggcgctgggttgcgtgcctggcgagcgt
gtcgccctgttggcgaagaactgcgccgaatggttcatcagcgacctggccatccagcac
gccgggttgatcagcgtgccgttgtatccgctgcaggctccggagcagattgcctatgtg
ctggagcacgccggttgcaaggtgattctgctgggcaaactggacgagccggacaagctg
gccagcggtatcgcgccgcatatcactcgcatcgccatgccttatccgaccatgcccgcc
gagcatcaatggcagaccttgctcgccgcgcacgaaccgttgcccggtacgcgtttgcaa
cgtggtgaggatctgctgtcgattctctatacctcgggtacgacggggcagcccaagggc
gtgatgctctcggcccacgccatggggttctcgtcggccaacgccacggcggagatgaac
atgacgccgcaggatcagtttttctcctacctgccgctgtcgcatgctgccgagcgtttt
ctggtggagttcaacagcctttattgcggtgcgccggtggccttcgtcgaatccctggag
actttcgccagcgacctgcgccaggtacggcccacggtgttcttctcggtgccgcgattg
tggacgcgctttcaacagggcgtgctggagaaactgccggcgcacaagctcgagcgcctg
ctgcgcattccgctgctcgggcgtctggtggcgcacaaggtgcgcgcaggcttggggctg
gatcgcacgcggattctggtatcgggtgcggcggcgatttcaaccggcttgttggagtgg
taccggcggttgggcatgaccatttgcgagggctacggtatgaccgagcactttgcctat
ggctgtttcaatcgccccggccaggtgcgcttcggcaccgtgggcaggccgatgccgaat
ctgcaggtgcgcatcgatgcggctggcgagattctgctgcgcagcgaaacgctgatgcag
ggctattaccgcgaaccagagaaaaccggggaaacgctcagggacggctggttgcacacg
ggggatcgcggccagctggatgaggccggctatctgcgcattaccgggcgggtgaaggac
atcttcaagaccagcaagggcaagtacgtggcgccggcgcccatcgagggcgagatagcc
aagagtcactgggtcgagcaggtgtgcctgatgggctgcaatctcgatcaaccgctggcg
ttgatcgaactgtcaccggctgctcgccagcaatctcgcgaggcgctggagcagtcgctg
accaaacatctgcatgcagtcaatctggggctggagccgcacgagcgcatcagtcacttc
tatctggtcagcgaaccctggacggtggataacggcagcatgacgccaaccatgaagatt
cgtcgcaatgtactggaggtgcgctatgccgaagtcattgccggtttgtccagtgatgcc
gctatcgtctgggaagcctga
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