Ectopseudomonas mendocina NK-01: MDS_3640
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Entry
MDS_3640 CDS
T01473
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
MDS_3640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_3640
Enzymes [BR:
pmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
MDS_3640
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
MDS_3640
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MDS_3640
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MDS_3640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AEB59671
LinkDB
All DBs
Position
complement(4003554..4004999)
Genome browser
AA seq
481 aa
AA seq
DB search
MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLV
TGIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDLVRTAYALRPEGIEWPEEDGRVSLKLERLTQANGIDHGQAHDALSDV
RATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIRLLQPMLHISGRFSAARHYLAPVLPL
AWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRREDLAEGEVPVPLKLLHINRCPV
VAPLSVLRDTDRQRLQLDWSHCERNVEMLRDAQPLWQDKLTDIYREESFAASSDPEQQLY
DGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLFRYRARNFPDSLSPDEGQRWV
DFCRQRLSDPQFGAPNTLAQFHAALEQLRADCNPQQLQLLQQWRAYAEQLQARLAVEWSC
V
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacttccagcatcttctggtacgactacgagaccaccggtatcaatccgcgttgcgat
cgtccgctgcaggtggcgggcatccgtaccgacgaggcgctcaacgagatcggcgagccg
ctgaacatctactgtcggcccagcgacgatatcctgccgcatcccgctgcctgcctggtg
accggcatcgatccgcagcgcctgcagcagctgggcctggacgagggcgagttcatgacc
cgcgtgcatgccgcactatcgacgcccggtacctgcggcgccggctacaacagcctgcgt
ttcgatgacgaggtgacgcgctacagcctctatcgcaacttcttcgacccttacgcgcgc
gaatggcagggcggcaacagccgttgggacctgatcgatctggtccgtacggcctacgcg
ttgaggcccgagggcatcgagtggcctgaggaggacgggcgtgtatcactcaagctggag
cggctgacccaggccaacggcatcgatcacggccaggcgcacgatgcgttatccgatgtg
cgcgcgaccatcggtctggcgcgcctgctgcgtgagcggcagcctcggctctacgacttc
ctctatcagctgcgcagcaagcagcgggtcatggatcagattcgcctgctgcagccgatg
ctgcacatttccggacgtttctctgcggcgcgtcactacctggcgccggtactgccgttg
gcatggcacccacgcaatcgcaacgcgctgatcgtctgcgacctgcaggctgatccaaca
cccttgctggacctggatgccgaggtgctgcgcagtcgcctctacacgcgccgcgaagac
ctcgccgagggcgaggtgccggtgcctttgaagttgctgcatatcaatcgctgtccggtg
gtcgcgcccttgtccgtgctgcgcgacacggatcggcagcgcctgcagctggactggtcg
cactgcgagcgtaacgtcgagatgttgagggacgcgcagccgctgtggcaggacaagttg
actgatatctaccgcgaagaatccttcgccgccagcagcgaccccgagcagcagctatac
gacggctttatcggggatcgtgatcgccgtttgtgcgagcaggtgcgtagtgctcagcct
cagtcgctggccaatgacaaatggccatttgatgatgcgcgactgccggagttgttgttt
cgttatcgcgcgcgcaactttcccgacagcttgtcgcccgacgaagggcagcgctgggtg
gatttctgtcggcagcgattgagtgatccgcagttcggtgctcccaataccctggcacag
tttcatgcagcgctggaacaattgcgtgctgactgcaacccccagcaactacagcttttg
cagcagtggcgagcctatgcagagcaactgcaggcgcgtttggctgtggagtggagctgt
gtttga
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