Ectopseudomonas mendocina NK-01: MDS_3911
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Entry
MDS_3911 CDS
T01473
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmk03016
]
MDS_3911
Enzymes [BR:
pmk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
MDS_3911
Transfer RNA biogenesis [BR:
pmk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
MDS_3911
Prokaryotic type
MDS_3911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
AEB59942
LinkDB
All DBs
Position
complement(4306364..4307284)
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AA seq
306 aa
AA seq
DB search
MAQVKRIRRKVDGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDADKAYETVAQLGVTTTTGDAEGDVLERRPVTVGRSEIEALLPRFRGEIK
QIPPMYSALKKDGQPLYKLARAGEVVEREARSVTIARLELLALEAEQARLSVDCSKGTYI
RTLVEDLGQLLGCGAHVAELRRTKAGPFDLARTVTLEELEAVHAEGGSEALDRFLQPVDS
GLLDWPLLQFSEHSAFYWLQGQPVRAPEAPKFGMVRVQDHNGRFIGIGEVSDDGRVAPRR
LIYTGA
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggtcaaacgtattcgccgcaaggtcgatggcatcatcctgctcgacaagccg
cgcggcttcacttccaacgcagccctgcaaaaggtgcgctggttgctcaatgccgagaag
gccgggcatacgggtagcctcgatccgctggcgactggtgtgttgccgctgtgtttcggc
gaggcgactaagttttcccagtacctgctcgatgccgacaaggcgtacgagaccgtggcg
caactgggcgtgaccaccaccaccggcgatgccgagggtgatgtgctcgagcgccgcccg
gtgaccgttggtcgcagcgaaatcgaggctctgctgccgcgttttcgtggagaaatcaaa
cagatacctccaatgtactcggccctgaagaaggatggtcagccgttgtacaagctggct
cgtgcaggtgaagtagtggagcgcgaggcgcgttctgttactattgcgcgcctggaattg
ctcgccctcgaggccgagcaggcccgcttgtcggtggattgcagcaaagggacctacatt
cggaccctggtcgaagaccttggccaattgctcggttgcggcgcgcacgtcgctgaactg
cgccgtaccaaggcaggcccgttcgatctggcgcgcaccgtgacgctcgaagagctggaa
gcggtgcatgctgaaggtggcagcgaagcgctcgatcgttttctgcagccggtagacagt
ggcctgctggattggccgctgctgcagttttccgagcacagtgcgttctattggctgcaa
ggtcagccggtgcgggcacctgaagcgccgaagttcggtatggtgcgggtgcaggaccac
aatggtcgcttcatcgggatcggtgaagtgagtgacgatgggcgtgttgccccgcgtcga
ttgatttataccggtgcgtag
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