Ectopseudomonas mendocina NK-01: MDS_4299
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Entry
MDS_4299 CDS
T01473
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MDS_4299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_4299
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_4299
Enzymes [BR:
pmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MDS_4299
Transcription machinery [BR:
pmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MDS_4299
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MDS_4299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
AEB60330
LinkDB
All DBs
Position
complement(4698213..4702412)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINETIKEKDGSITKNTRIVDTTVGRALLFQIVPAGLSYDVVNQPMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEPVVDREGKTVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLIDEQWVEFIELNSVDEVVVRSPITCETRYGICAKCYG
RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKYVERVDGNLVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGIVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIAVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVTESGDSSFIKGDQMELTQVLGENERLAEEDKFVAKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcgggttggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaaa
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggcctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtggccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggtcgcccacatctggttcctcaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgaacgcgtgctctat
ttcgagagctacgtggtgatcgatccgggcatgaccaccctggagaagggccagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgactttgacgcgcgcatg
ggtgccgaggccgtacgcgagctgctgcacgccatcgacctggatcacgagatcggccgc
ctgcgtgaagagattccgcagaccaactccgagactaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttcaaggactccggcaacctgcctgagtggatggtgctgacc
gttctgccggttctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacttcggatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccagacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggctgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgtgatcaccgtgggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggctctggagctgttcaaaccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtcctgctcaaccgtgcaccgaccctgcaccgtctgggtatccaggcgttcgagccggtg
ctgatcgaaggtaaagccatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctttcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagcggtgaacgcc
aagggtgaaggtcgcgtcttcgccgacctgcaggaagtcgaccgcgtgttccgcgccggc
gaagcgtccctgcacgcccgcgtgaaagtgcgtatcaacgaaaccatcaaagagaaagat
ggctcgatcaccaagaacacccgcattgtcgacaccaccgtcggccgtgcgctgctgttc
cagatcgtgccggccggcctgtcctacgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcaccgtgggtctgaaggacaccgtcatcttc
gctgaccagctgatgtacaccggtttcgcctactcgaccatctccggtgtgtcgatcggt
gtgaacgacttcgtcatcccggatgagaaggcgcgcatcattgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggttactcagggcgagaagtacaac
aaggtgatcgacctttggtcgaaggccaacgatgaagtttccaaggcaatgatggccaac
ctctcgaaagagccggttgtcgatcgcgaaggcaagaccgtcgagcaggagtccttcaac
tccatgtacatgatggcggactccggtgcgcgtggtagcgccgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgagacgccgatcacc
gcgaacttccgtgaaggcctgtcggttctgcagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgacccgtcgtctg
gtcgacgtggcccaggacctggtagtgaccgagatcgactgcggcaccgagcagggcctg
ttgatgaccccgcacatcgaaggcggcgacgtggtcgagccgctgggtgagcgcgtactc
ggtcgtgtcatcgccaaggacgtgttcaagccgggcaccgaggacgtcatcgttccggcc
ggtaccctgatcgacgagcagtgggtcgagttcatcgagctgaacagcgtcgacgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgttacggcatctgcgccaagtgctacggt
cgcgacctggctcgtggtcaccgcgtcaacatcggtgaggccgtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcc
gcaagccggacttcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgtctg
cacaacctgaagtacgtcgagcgtgtcgacggcaacctggtagcggtttcccgttccggt
gagctggccgttgctgacgagttcggtcgtgagcgcgagcgctacaagctgccgtacggt
gccgtgatttccgtgaaggaaggtgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtatcgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacatcgag
gttctcgatccgaaagatcgtccggctgctggcaaggacattcgtccggccatcaagatg
gtcgacgccaacggcaaggaactgctgctgccgggtaccgacgttcccgcccagtacttc
ctgcctgccaacgccctggtcggcgtggcggacggtgcgcagatcgcggtcggtgacgtt
atcgcccgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaggaagcttcgatcctggcggagatcagc
ggcaccatctcgttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagcgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaggtcatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggcgtcagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgaagtcaccgagtccggcgactcttccttcatcaagggcgaccagatg
gagctcacccaggttctgggcgagaacgagcgtctggccgaagaggacaagttcgtcgcc
aagtacacccgtgtactgctgggtatcaccaaggcgtcgctgtccaccgagtcgttcatc
tccgcagcgtccttccaggaaaccactcgcgtcctcaccgaggcagcggttactggcaag
cgcgactacctgcgtggtctgaaagagaacgtggtcgtgggtcgcctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgccgacaagccggtacgc
gtcagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggaaattga
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integrated database retrieval system
