Ectopseudomonas mendocina NK-01: MDS_4429
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Entry
MDS_4429 CDS
T01473
Name
(GenBank) helicase C2
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MDS_4429
09124 Replication and repair
03420 Nucleotide excision repair
MDS_4429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmk03021
]
MDS_4429
03036 Chromosome and associated proteins [BR:
pmk03036
]
MDS_4429
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_4429
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MDS_4429
Transcription machinery [BR:
pmk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MDS_4429
Chromosome and associated proteins [BR:
pmk03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MDS_4429
DNA repair and recombination proteins [BR:
pmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MDS_4429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AEB60460
LinkDB
All DBs
Position
4855726..4858014
Genome browser
AA seq
762 aa
AA seq
DB search
MSLRIAVRELCEFTAKEGDLDLRFTPSPTAAEGMAGHATVVARRGPDYVSELPLIGEFEG
LTVSGRADGFDPEFRLLEEIKTHRGDISRIPANHRLLHWAQVKIYGWLLCQELGFDELDL
AVVYFNVITQQETVFRERHSAASLGEFFALHCRRYIHWARQEQAHQHARNQALEKLSFPY
GEFRHGQRQLAEAVYRAARDGHYLLAQATTGIGKTLGTLFPQLKAMPGQQLDRLFFLSAK
TPGRRLALDALQRLREPETPLRVLEHVARDKACEHPSKACHGDSCPLAKGFYDRLPAARS
AALKERWLDQRAVRNIAIAHGVCPYYLSQELCRWSDVVVCDYNYYFDLGALLHSLTLINQ
WRVCLLVDEAHNLVERGRGMYSAELDQARFKAMCRDAPKRLKSVLERVDRHWDQLHREQE
VPYQVYPLAPDLLLAALGKAVSAITDLLTDQPEGNGGELLSFYLDAMLFCRLAESFGPHS
LFDINRDEAGNGRSYSTLCIRNILPAPFLGPRFEDAHSATLFSATLSPSHYYLDLLGLPE
ETQCLDVASPFSAEQLHVQVVRNLSTRYQHRDASLAPICQLMARQYAERPGNYLAFFSSY
QYLEQVLQELRRDHPQIPVWTQSRQMDEAARQSFIERFQIGGRGIGFAVLGGVFGEGVDL
PGERLIGAFVATLGLAQLNPINEEIRQRMDSLFGNGYDYTYLYPGLQKVVQAAGRVIRTP
EDQGVLYLIDDRFARPEVRRLLPTWWQVELLRLPMQAPVLEP
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttgagcctgcgcatcgccgtgcgcgagctatgcgagttcaccgcgaaggagggtgacctc
gacctgcgcttcaccccctcgcccaccgccgccgaaggtatggccggacacgccaccgtg
gtcgcgcggcgcggcccggattacgtctccgagcttcccctgatcggcgagttcgaaggg
ctgacggtcagtggccgcgccgatggtttcgaccccgagtttcgcctgctggaagagatc
aagacccaccgtggcgacatctcgcgcatccccgccaaccaccgtctgctgcactgggcg
caggtgaagatctacggctggctgctgtgtcaggagctgggcttcgatgaactggatctg
gcggtggtctacttcaacgtcatcacccagcaggaaacggtattccgcgagcgccacagc
gcggcgtccctgggcgagttcttcgccctgcactgccgccgctacatccattgggcgcgc
caggagcaggcacatcagcacgcacgcaaccaggcgctggagaaactgagcttcccctac
ggcgaattccgccatggccaacggcaactggccgaggccgtgtaccgcgccgcgcgtgac
ggccattacctgctcgcgcaggccaccaccggcatcggcaagaccctcggcaccctgttt
ccgcagctcaaggccatgcccggccagcagctcgaccgcctgttcttcctcagcgccaag
acgccgggccggcgcctggcactggatgccctgcaacgcctgcgcgaaccggagacgccg
ttgcgcgtgctggaacacgtcgcccgcgacaaggcctgcgaacacccgagcaaggcctgc
cacggcgactcctgcccgctggccaagggattctacgaccgcctgcctgcggcacgcagc
gcggcactgaaagaacgctggctggatcaacgagcggtgcgcaatatcgccatcgcccat
ggcgtgtgcccctactacctgagccaggagctgtgccgctggagcgacgtggtggtgtgc
gactacaactactacttcgacctcggcgccctgctgcacagccttaccctgatcaaccag
tggcgcgtctgcctgctggtggacgaggcgcacaacctggtggagcgcgggcgcggcatg
tacagcgccgagctggatcaggcgcgcttcaaggccatgtgccgcgacgcgccaaaacgc
ctgaagagcgtactggaacgggtcgaccgccactgggatcaactgcaccgcgagcaagag
gtgccctatcaagtctacccgctggcgccggacttgctgctcgccgcgctgggcaaggcg
gtcagcgccatcaccgacctactcaccgatcagcccgaaggcaatggcggcgagctgctc
agtttctatctggacgccatgctgttctgccgcctggcggaaagcttcggcccgcactcg
ctgttcgatatcaaccgcgatgaggccggcaacgggcgcagctactctaccctgtgcatc
cgcaatatcctcccggcgcccttcctcggcccgcgcttcgaggacgcccacagcgccaca
ctgttctccgccaccctcagccccagccactactacctcgacctgctcggcctgccggaa
gagacccagtgcctggacgtcgcctcgccgttcagcgccgaacaactgcacgtacaggtg
gtgcgcaacctgtcgacacgctaccagcaccgcgacgcctcgctggcaccgatctgccag
ttgatggcgcgccagtacgccgaacgccccggcaactacctggccttcttcagcagctat
cagtatctggaacaggtgctacaggaactgcgccgcgaccacccacagattccggtgtgg
acgcaatcccggcagatggacgaagcggcgcgccagagctttatcgagcgcttccagatc
ggcgggcgcggcatcggcttcgccgtgcttggcggcgtgtttggcgaaggggtggacctg
cccggcgaacgcctgatcggcgccttcgtcgccaccctcggcctggcccagctcaacccg
atcaacgaagaaatccgccaacgcatggacagcctgttcggcaatggctacgactacacc
tacctctaccccggcctgcaaaaggtcgtgcaggccgccggccgggtgatccgcacgccc
gaagaccagggcgtgctctacctgatcgacgaccgcttcgcccgcccggaagtccgccgc
ctgctgccaacatggtggcaggtcgaactgctgcgtttgccaatgcaagcacccgtactg
gaaccgtaa
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integrated database retrieval system
