Ectopseudomonas mendocina NK-01: MDS_4473
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Entry
MDS_4473 CDS
T01473
Name
(GenBank) hypothetical protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MDS_4473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_4473
Enzymes [BR:
pmk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
MDS_4473
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MDS_4473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
Motif
Other DBs
NCBI-ProteinID:
AEB60504
LinkDB
All DBs
Position
4908574..4909434
Genome browser
AA seq
286 aa
AA seq
DB search
MHSLRFDGTFTTWRQAARRALLQGLAPHQLQWLDEEAAPGLFDEAAERAPKPSGRLRVSP
ELLDLLESAAQYRGEERWSLLYRVLWRFVQGERSAVLAGDPDGSELHRRLKAVRREAHHL
HAFVRFQPCKSAGAPDFVAWFEPAHDILASASDHFAERLGKHSWLIATPRDGVYWDGQRL
LHQRRCPAQWQAWAQQPEDDGQALWRAYYGSTFNPARLNRSVMQQHLPLRFWKHLPEGPL
IPQLMSEARAGAQRDGQALTLAGRKGKRIAMAAEAIAEGSGAGDQA
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcctgcgcttcgacggcaccttcaccacctggcgccaggccgcacgccgcgct
ttgctccagggcctggcgccccatcaattgcagtggctggacgaagaggccgcgcccggc
ctgttcgatgaagcggccgagcgcgcaccaaagcccagcggccgcctacgcgtttcaccc
gaattgctcgacctgctggaaagcgccgcgcagtaccgcggtgaggaacgctggagcttg
ctctatcgtgtgctctggcgcttcgtgcagggcgagcgcagcgctgtgctggccggcgat
cccgatggcagcgaactgcatcgccggctcaaggcggtacgccgcgaggcccatcacctg
catgccttcgtgcgtttccagccgtgcaagtcagcaggcgcgccagatttcgttgcctgg
ttcgagccggcgcacgacatcctggcctcggccagcgaccacttcgccgagcgcctgggc
aagcacagttggctgatcgcgacgccgcgcgatggcgtgtactgggatggccagcgcctg
ctgcaccagcgccgatgcccagcgcagtggcaagcctgggcgcagcagcccgaggatgac
ggccaggccctgtggcgcgcttactacggcagcaccttcaacccggcgcgactcaaccgc
tcggtgatgcagcaacatctgccgctgagattctggaagcacctgccggaaggcccgctg
attccgcaattgatgagcgaagcgcgcgccggcgctcagcgcgatggccaggcactcacc
ctggccggccgcaagggcaagcgcatcgccatggcagctgaggcgattgcagaaggctct
ggagcaggagatcaggcgtag
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