Ectopseudomonas mendocina NK-01: MDS_4518
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Entry
MDS_4518 CDS
T01473
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MDS_4518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_4518
Enzymes [BR:
pmk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MDS_4518
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MDS_4518
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MDS_4518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AEB60549
LinkDB
All DBs
Position
complement(4951495..4952307)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPYLEGQRVSRVIVRERRLRWPIPEDLDIRLSGQRIECVERRAKYL
LIKAEVGSLIGHLGMSGSLRLVECGLAAAKHEHVDIELESGLALRYTDPRRFGALLWSED
PLRHELLSKLGPEPLGGLFDGERLFQMSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGSISRARYLRLAEEIKRILTHAIERGGTTLRDFVGGDGQPGYFQQELFAYGR
GGEFCKVCGSTLREVKLGQRASVYCPKCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagtcgaaactacccgccgaggtatcgccccctatcttgaaggt
cagcgcgtcagccgcgtgatcgtgcgcgaacgtcgcctgcgctggccgatccccgaggac
ctcgacattcgcctgtccggccagcgtatcgagtgcgtcgaacgacgcgccaagtacctg
ctgatcaaggccgaagtcggcagtttgatcggccatctggggatgtccggcagcctgcgt
ctggtggaatgcgggctggccgcagccaagcatgagcatgtggatatcgaactggagtcc
ggtctggcgttgcgttataccgatccgcgtcgcttcggtgcactgctctggagcgaagat
ccgctgcgccacgaactgctcagcaagctcggtccggagccgctgggcgggcttttcgat
ggcgagcggctgttccagatgtcgcgtgggcgcagcatggcggtcaaaccgttcatcatg
gacaacgccgtggtggtgggcgtgggtaacatttacgccaccgaagcgctattcgctgcc
ggtatcgacccgcgccgcgaagccggttcgatctcgcgggcacgctatctgcgcctggcc
gaggagatcaaacgcatcctcacccatgccatcgagcgtggcggcaccacgctgcgcgac
ttcgtcggaggtgatggtcagcccggctacttccagcaggagctgttcgcctacgggcgt
ggcggtgagttctgcaaggtctgtggcagcacgctgcgtgaagtcaaattggggcagcgg
gcgagtgtctactgtcccaagtgtcaacgctga
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