Ectopseudomonas mendocina NK-01: MDS_4846
Help
Entry
MDS_4846 CDS
T01473
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmk
Ectopseudomonas mendocina NK-01
Pathway
pmk03420
Nucleotide excision repair
pmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MDS_4846
03430 Mismatch repair
MDS_4846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmk03400
]
MDS_4846
Enzymes [BR:
pmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MDS_4846
DNA repair and recombination proteins [BR:
pmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MDS_4846
MMR (mismatch excision repair)
Other MMR factors
MDS_4846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_22
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AEB60877
LinkDB
All DBs
Position
5305723..5307906
Genome browser
AA seq
727 aa
AA seq
DB search
MQNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAIGASPHSIL
SVTFTNKAAAEMRHRIEQMLGHNPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDD
QQRLIKRVIRELGLDEQRWPAKQAQWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYE
AACARTGVIDFSELLLRALDLWRDKPGLLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGARIENIQQFSSDFPDTQVIRLEQNYRSTAGILKAANALIA
NNNGRLGKELWTDGGDGEPLALYAAFNEHDEARYVVETIEDALRKDGLKRSEIAILYRSN
AQSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERIVNVPARG
IGEKTIETIREYARAHDVHMWEAIRLMLANKALPGRASGALAGFIELVEGLAEKVLAMPL
HQMTQVVIEQSGLLAYHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFLTHA
SLEAGDTQAAENEDSIQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQKLVISYAETRRLYGSETYNKVSRFVREIPAPLIQEVRLSNSVSRPVNTSS
MGGSSLFAGSAVPQTPFNLGQRVRHSLFGEGTILNFEGAGAQARVQVNFENEGSKWLMLA
YAKLEAV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgaccccgaactcctcctcgcttcgctcaacgacgcccaggtccaggccgtg
gccgctccgctcggccgccaattggtgctggccggcgccggctcgggcaagacccgcgtg
ctggtgcaccgcatcgccttcctgatccaggcgattggcgcgtcgccccattcgatcctg
tcggtgacctttaccaacaaggccgccgccgagatgcgccaccgcatcgaacagatgctt
ggccacaacccggccggcatgtgggtcggcaccttccacggcctggcccatcgtctgctg
cgcgcgcactggcaggaagccgggctggccgagaacttccagattctcgactccgacgat
cagcagcgcctgatcaagcgggtgatccgcgaactgggcctggacgaacaacgctggccg
gccaagcaggctcagtggttcatcaacggacagaaggatgaaggcttccgcccgcagcat
atccaggctggtggcgacctgttcctggccaccatgcgcggcatctacgaggcctacgaa
gcggcctgcgcccgtaccggggtgatcgacttttccgagctgctgctgcgtgcgctcgac
ctctggcgcgacaagccaggcttgctcgagcattaccagcggcgcttccgccatatcctg
gtcgacgagttccaggacaccaacgccgtgcagtacgcctggctgcgtctgctggccaag
ggcggcgacagcctgatggtggtcggtgacgacgaccagtcgatctacggctggcgtggc
gcgcgcatcgagaacatccagcagttctctagcgacttccccgatacccaggtgatccgc
ctggagcagaactatcgctccaccgccggcatcctcaaagccgccaacgcgctgatcgcc
aataacaacgggcgcctcggcaaggagctgtggaccgatggcggtgacggcgagccgctg
gccctgtacgccgccttcaacgagcatgacgaagcacgctacgtggtcgagaccatcgag
gacgccctgcgcaaggacggcctcaaacgcagcgagatcgccattctgtatcgctccaac
gcccagtcacgggtgctggaagaagcgctgctgcgcgagaagatcccctaccgcatctac
ggcggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctacctgcgtctg
ctcgacggtcgtggcaacgacgcggcgctggagcgcatcgtcaacgtgccggcacgcggc
atcggcgagaagaccatcgagaccatccgcgagtacgcccgcgcccacgacgtgcacatg
tgggaggcgatccgcctgatgctcgccaacaaggccctgcctggccgcgcatccggcgcg
ctggcgggctttatcgagctggtcgagggcctggccgagaaagttctggctatgcccctg
caccagatgacccaagtggtcatcgagcagagcggcctactcgcctatcacgaggcggaa
aagggcgagaagggccaggcccgggtggagaacctggaggaactggtcagcgccgcgcgc
gccttcgagaacgacgaagacgatgagctgaccccgctgcaggccttcctcacccacgca
tcgctggaggccggggatacccaggccgccgagaacgaggacagcattcaactcatgacc
ctgcacagcgccaagggcctggaattcccgctggtgttcctggttggtatggaggagggt
ctgttcccacacaagatgagcctggaggaaccgggccgactggaagaagaacgccgcctg
gcctatgtcggcattacccgtgccatgcagaagctggtgatcagctacgccgaaacccgg
cgtctctacggtagcgagacctataacaaggtgtcgcgcttcgtccgcgaaatccccgca
ccgctgattcaggaggtacgcctgagcaacagcgtcagccgcccggtgaacaccagttcc
atgggaggcagcagcctgttcgccggcagcgccgtgccgcagacgcccttcaacctgggt
cagcgggtacgccacagcctgttcggcgagggcaccatcctcaacttcgagggtgccggc
gcacaggccagggtgcaggtaaattttgaaaacgaaggcagtaagtggctgatgctggca
tacgccaagctcgaagccgtgtga
DBGET
integrated database retrieval system
