Candidatus Phytoplasma mali: ATP_00115
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Entry
ATP_00115 CDS
T00729
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pml
Candidatus Phytoplasma mali
Pathway
pml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATP_00115 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pml03019
]
ATP_00115 (srmB)
03009 Ribosome biogenesis [BR:
pml03009
]
ATP_00115 (srmB)
Enzymes [BR:
pml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATP_00115 (srmB)
Messenger RNA biogenesis [BR:
pml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATP_00115 (srmB)
Ribosome biogenesis [BR:
pml03009
]
Prokaryotic type
rRNA helicases
ATP_00115 (srmB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
DeaD_dimer
P2
DUF6832
Motif
Other DBs
NCBI-ProteinID:
CAP18302
UniProt:
B3R0D8
LinkDB
All DBs
Position
complement(153328..154923)
Genome browser
AA seq
531 aa
AA seq
DB search
MDILFENFNILPQTQKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIP
IIEKIDLNIKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQFKVLE
TKPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPKKRQT
VLFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRLLDLE
NPNSVIIFANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKILIATD
VAARGIDISSITMVINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFVAPSKLSQLKSLENY
LKEKLIFKTIPKVKDIQEKKLKNFQEKIFEMIKNNPQEDINDELIKNLLDNFDNKQIIKA
LLNLIMPIKRNYQEISQTNNFKNNFVNKNFSSSRNMLPLSINLGKKDMINPALLLKILHE
KFNIYSKYVGNIKHLSNESIFEIPNHFWMKIKNKKNIFFNNKILKINQTYL
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatattttatttgaaaactttaatattttaccacaaacacaaaaagctttaaaagaa
ttaaattttttaaaacctaccgctattcaaaatttagtaattagtgaaatgattgaaggt
tatgatataatcggtcaagctcaaactggtacaggtaaaacttttgcttttggaatacct
attattgaaaaaattgatcttaatataaaacaaacacaaagtttaattttgtgtccaacg
agagaattagctctccaagtttttcaagaatttaaaaaattaattaaattttatgtagaa
ataaaaatcgctgttatttatgggggtgaatcttatattaaacaatttaaagtattagag
actaaacctcatataattattgcaacccctgggagagttatcgatcttttagaaagaaaa
aaaattgatttttcaggattaaaaattttaactttagatgaagctgatgaaatgttaaat
atgggttttcaagaagcactagaaactattttacaaaaaataccaaaaaaaagacaaaca
gttttattttccgctactttaccgcctactattcaaaaaatagctaataaatatcaaaat
aatcctaaagttttaaaagtttatcaaaaaaacattgctgttagttcagtacaacaattt
tattttttagttaaagaatttgataaattaaaattattagttcgtttattagatttagaa
aatcctaattcagttattatttttgcaaatacaaaaaaagatgttgatgaaattaacgct
tatttacaagaaaataatttttcagttgattttcttcatggtgacttaaaacaaaatcaa
agacaacaagttatgaataattttcgtaatcaaaaaattaaaattttaatagctactgat
gttgcagctagaggtattgatatttcttctattactatggttattaattatgatttatcc
cgccaaaatgaaatttatgttcatcgtataggtagaactgggagagcaggtttaaaaggt
ttagcatatagttttgttgctccaagtaaattatcccaattgaaaagtttagaaaattat
ttaaaagaaaaattaatttttaaaaccatacctaaggtaaaagatattcaagaaaaaaaa
ttaaaaaattttcaagaaaaaatttttgaaatgattaaaaataatccgcaagaagatatt
aatgatgaattaataaaaaatttattagataattttgataataaacaaattataaaagca
ttattaaaccttataatgccaataaaaagaaattatcaagaaatttctcaaactaataat
tttaaaaataattttgttaataaaaattttagttcttctcgtaatatgttacctttaagt
attaatttgggtaaaaaagatatgattaatcccgctttattattaaaaatattacatgaa
aagtttaacatttacagtaaatatgttggtaatattaaacatttatctaatgaaagtatt
tttgaaattcccaatcatttttggatgaaaataaaaaataaaaaaaatatattttttaat
aataagatattaaaaattaaccaaacatatctttaa
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