Prochlorococcus marinus subsp. pastoris CCMP1986: PMM0496
Help
Entry
PMM0496 CDS
T00142
Symbol
sigA, rpoD
Name
(GenBank) Putative principal RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
pmm
Prochlorococcus marinus subsp. pastoris CCMP1986
Brite
KEGG Orthology (KO) [BR:
pmm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PMM0496 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmm03021
]
PMM0496 (sigA)
Transcription machinery [BR:
pmm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PMM0496 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Mt_ATP_synt
Motif
Other DBs
NCBI-ProteinID:
CAE18955
UniProt:
Q7V2I0
LinkDB
All DBs
Position
complement(469063..470253)
Genome browser
AA seq
396 aa
AA seq
DB search
MCPAATESKSSNPSSKKKINKKIDSNFKNDREEESIKYQDPIQNSKQKPLNDEGSIENKD
EFNGSDEEAKAIGNVKLGPKGIYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLE
ELATQYESEKGHFPSVREWAELTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYM
NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVH
LYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEE
DSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEI
GQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccagccgcaacagaatcaaaaagttctaatcctagttccaagaaaaaaattaat
aaaaaaattgattcaaattttaaaaacgatcgagaagaagaaagtatcaagtatcaagat
cctattcaaaactcgaaacaaaagccacttaatgatgaaggcagtattgaaaataaagat
gaatttaatggttctgatgaagaggccaaagctattggtaacgtaaagcttggaccaaag
ggaatatacacagaagattctataagagtttatcttcaggaaattggaagaattagatta
ttaagacctgatgaagaaattgaacttgctagaaaaatagctgatctactccaacttgaa
gagctagctacacaatacgagtctgagaaaggacatttcccttcagttagagaatgggct
gaattaaccgacatgcctctctctaaattcagaagaagacttctcttagggagaagagct
aaagagaagatggttcaatctaatttaagattagttgtctctattgctaagaaatatatg
aatagaggcctatcttttcaagatttaatacaagaaggaagcttaggtttaatcagagct
gccgaaaaatttgaccatgaaaaaggttataaattttctacttatgctacttggtggatt
cgtcaagcgataacacgagcgatagcagatcaaagtagaacgattagattgcctgttcac
ttatatgaaacaatttctagaataaaaaaaacaacaaaagttcttagtcaagagtttgga
agaaagcctagcgaagaagaaatagctgagagtatggaaatgacaattgaaaaattaaga
tttatagctaaaagtgctcagcttccaatctcattagagacaccaataggtaaagaagag
gattcaaggcttggagactttatagaagctgatattgaaaatccagaacaagatgtatct
aagactttattgagagaagatttagaaggggttttggcgactttaagcccaagagaaagg
gatgttctaagactgcgatatggaatagatgatggaaggatgaagactcttgaagagata
ggacaaatttttgatgttacaagagagagaattagacaaatagaagcaaaagctctgaga
aagctaagacatccaaacagaaatggagttctaaaagaatatattaaataa
DBGET
integrated database retrieval system
