Prochlorococcus marinus subsp. pastoris CCMP1986: PMM1101
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Entry
PMM1101 CDS
T00142
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
pmm
Prochlorococcus marinus subsp. pastoris CCMP1986
Pathway
pmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMM1101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmm03019
]
PMM1101
03009 Ribosome biogenesis [BR:
pmm03009
]
PMM1101
Messenger RNA biogenesis [BR:
pmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMM1101
Ribosome biogenesis [BR:
pmm03009
]
Prokaryotic type
rRNA helicases
PMM1101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
AAA_22
SWI2_SNF2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAE19560
UniProt:
Q7V0Z3
LinkDB
All DBs
Position
complement(1045073..1046851)
Genome browser
AA seq
592 aa
AA seq
DB search
MASNKDNQLVEKNDDNLGVENISNNPSIQSEQKLEVTEDEISFKEEDLDNGFACFGFNKL
ILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLENNKESNA
KVLVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKRKTDIVVGTPGR
IMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSATMPNEIR
NIAKKYLNEPAEILIKSVKQETQLITQKYINVQRHHKLDALKRILEITNEGVIIFVRTKL
LTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARGLDVERIKL
VINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRNKIEEIEIPNN
KIINEKRMGKLITNLNESSLDQENNEEKKALMIDILDTLREKHSMEDSNIAMAAINLAIG
NKSFFINEDESWLYRQNNSDRNRSNRNGNNRMRNTNRRNNYQNDSFETYKFNFGKMDRVR
VANIISSICTSTNINGRLIGKIQIFNEYSLVDLPRDLHGEVKNKLKNLRIRN
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaataaagacaatcaattagtagaaaaaaatgacgataatttgggggtagaa
aatatttctaataatccttcaattcaatcagaacaaaaattagaagttaccgaagatgaa
atttcttttaaagaagaggatcttgataatggatttgcttgctttgggtttaataaatta
atattaaattcattagaaagtaaaggatataaaactcctacacctatacaaaaagcagca
attccagaattaatgcttggaagagatttgttaggacaagctcagactggtacaggtaaa
acagcagcctttgctctcccattaatagaaaagcttgaaaataataaagaatcaaacgct
aaagttttggttatgaccccaacaagagagttggctactcaagttgcagattcttttaaa
agttatagtgctgaatcaactaatttaaggacattagcaatatatggaggaactgatttt
aggaatcaaatctcatcacttaaaagaaagacagacattgtcgttggaactcctggaaga
ataatggatcatataagacaaggaacttttaagatcaataacataagttgtcttgttctt
gatgaagcagatgaaatgttaaaaatgggatttcttgaagatattgaatggattatagat
aaacttccagaaaataaacaaatggttttgttctctgcaacaatgccaaatgagataaga
aacatagcaaaaaaatatctaaatgaaccagctgaaatacttattaaaagcgttaaacaa
gaaactcaattaattactcaaaaatatattaatgttcaaaggcaccataagttagatgct
ctaaaaagaatattagaaataacgaatgaaggagtaataatatttgtaaggactaaatta
cttactacctcaattgcggaagctctagaaaactcaggtcatagtgtagctgttcttaat
ggtgacatcccacaaaatcaaagagaaaatacagttgatagattaaaaaaaggatttatt
gatattcttgttgcaactgatgtcgctgctagaggcctagatgttgaaaggattaaactc
gttattaattacgattttccttttgataaggaaacatatactcatagaatcggtagaaca
gggagggcaggtaggtctggggaagcaattttatttgtaaatcaaagagaaaaacatttt
cttaggaatttagaaaattcaacaagaaataaaatagaagaaatcgagatacctaataat
aaaataattaatgaaaaaagaatgggtaaattaattacaaatttgaatgaaagttcttta
gatcaggaaaataatgaagaaaaaaaagctttgatgatcgatattctggataccctaaga
gaaaagcattctatggaagattcaaatatagcaatggcagctattaatttagcaataggt
aataaatctttctttattaacgaagacgagtcttggctttatagacaaaataattctgat
cgtaatagatcaaatagaaatggaaataatcgtatgagaaatacaaatagaagaaataat
tatcaaaatgattcttttgaaacctataaatttaattttggcaaaatggacagagttaga
gtagcaaatattatttcttctatttgtacgtctacaaatattaatggaagattgattgga
aagatacaaatatttaatgagtacagcttggtagatttaccaagagatttacatggtgaa
gttaagaacaaactaaaaaatttaagaataaggaattaa
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