Prochlorococcus marinus subsp. pastoris CCMP1986: PMM1484
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Entry
PMM1484 CDS
T00142
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmm
Prochlorococcus marinus subsp. pastoris CCMP1986
Pathway
pmm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMM1484 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmm03021
]
PMM1484 (rpoC1)
03400 DNA repair and recombination proteins [BR:
pmm03400
]
PMM1484 (rpoC1)
Enzymes [BR:
pmm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMM1484 (rpoC1)
Transcription machinery [BR:
pmm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMM1484 (rpoC1)
DNA repair and recombination proteins [BR:
pmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMM1484 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Pkinase_fungal
Motif
Other DBs
NCBI-ProteinID:
CAE19943
UniProt:
Q7V007
LinkDB
All DBs
Position
complement(1418077..1419981)
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AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKISIASPQRIMDWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVSHVWY
LKGIPSYVAILLDIPLRDVEQIVYFNCYVVLDVGDHKDLKYKQLLTEDEWLEIEDEVYAE
DSTIENEPVVGIGAEALKQLLEDLDLNQIAEELREEITNSKGQKRAKLIKRIRVIDNFLA
TNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQKGDDEVM
QVLQEVIEGHPILLNRAPTLHRLGIQAFEPKLVGGRAIQLHPLVCPAFNADFDGDQMAVH
VPLALEAQTEARMLMLASNNILSPATGEPIVTPSQDMVLGSYYLTALQPNFKKPNFGDNQ
KTYASLEDVIFAFEDKRVGLHEWVWVRFNGEVDDDEEANKPKESKELEDGSRLETWNFRR
DRFDSQNNLISRFILTTVGRVVMNHTIIDSVSKT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgactaacagcaacttaagaacagaaaatcattttgattacgtcaagatatctattgct
tcacctcaaagaataatggattgggggcaaaggacattacctaatgggcaagtagtagga
gaagttactaaaccagagacgataaactatagaaccttaaaaccagaaatggacggactt
ttttgtgaaaaaatatttggaccatccaaagactgggaatgtcactgcggtaaatataaa
agagttagacatcgtggaattgtctgtgaaagatgtggtgtagaagtaactgaaagtaga
gtaagaaggcatagaatgggatatataaaactggcagctccagtttcccatgtttggtat
ttaaagggtataccgagttatgtcgcaattctgctagatattcctcttagagatgtagaa
cagatagtttactttaattgttatgttgttttggatgttggggatcataaagatcttaaa
tataagcaactccttactgaggatgaatggttagaaatagaagatgaagtttatgcagaa
gactctactattgaaaatgaaccagttgttggtataggtgcagaagctcttaagcaatta
cttgaggatcttgatttaaaccaaattgctgaagaacttagagaagaaattacaaacagt
aaaggtcaaaaaagagcaaaactcattaaaaggataagggtaattgataatttcctggca
actaacgcaaagccagaatggatggtactagatgcaatccctgttattcctcctgatctt
agaccaatggtccaacttgatggaggtaggtttgccacatccgacttaaacgatctttat
agaagagtcataaataggaataataggttggctaggcttcaagaaatcttagctcctgag
atcattgtcagaaatgaaaaaagaatgttgcaagaagctgttgatgcacttattgataat
ggaagaagaggtagaacagttgttggggctaataatagagctctaaaatctctcagcgat
ataatagagggtaagcaggggagatttagacagaatttacttggtaaacgtgttgattat
tctggaaggtctgtcatagttgttggtccaaagttaaagatgcatcaatgcggactccct
aaagaaatggctattgagctttttcaaccttttgtgatacatagattaatccgtcaaaat
attgtaaataatattaaagcagcaaaaaaattaatacaaaaaggcgatgatgaagtcatg
caagtactccaagaagttattgaaggtcacccaatacttttaaatagagctccaactctt
cataggttaggaattcaagcttttgaacctaaattggttggaggtagagcgatccaacta
cacccacttgtatgtcctgcctttaatgctgattttgacggagatcaaatggctgtccat
gtccctttagcattagaagcacagacagaggcacgtatgcttatgttagcaagcaataat
atactatcaccagctacaggagaaccaattgtaactccctcacaagatatggttttaggt
tcttattatctaactgcattacagccaaactttaaaaaaccaaattttggtgacaatcaa
aaaacttatgcttcattagaagatgttatttttgcttttgaagataaaagagttggttta
catgaatgggtctgggtaagatttaatggtgaagttgatgatgatgaagaagcgaataaa
cccaaagaatctaaagaactggaggatggttcaaggttagaaacttggaactttagaaga
gacagatttgattctcaaaataatcttataagtagatttattttaacaacagtaggaagg
gtggttatgaatcatacgatcatcgattctgtttcaaaaacgtaa
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