Prochlorococcus marinus NATL2A: PMN2A_0647
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Entry
PMN2A_0647 CDS
T00267
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmn
Prochlorococcus marinus NATL2A
Pathway
pmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMN2A_0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmn03019
]
PMN2A_0647
03009 Ribosome biogenesis [BR:
pmn03009
]
PMN2A_0647
Enzymes [BR:
pmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMN2A_0647
Messenger RNA biogenesis [BR:
pmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMN2A_0647
Ribosome biogenesis [BR:
pmn03009
]
Prokaryotic type
rRNA helicases
PMN2A_0647
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
DeaD_dimer
CMS1
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAZ58138
UniProt:
Q46K40
LinkDB
All DBs
Position
1138306..1140075
Genome browser
AA seq
589 aa
AA seq
DB search
MTNKNPHEDSSCPVEQDVLEESSEEILEEIEQNSENGFSEFNFSEELIQTISDKGYSSPT
PIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKNVGHPQVLVLAPTRELAMQV
AESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHL
SCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVLFSATMPSEIRRLSKKYLNSPAEITI
KATELKERLIRQRYISVQNVYKVNALQRVLEAVSEEGVIIFARTKAITIVVAEKLESYGY
NVAVLNGDIPQNQRERTVERLRQGSINILVATDVAARGLDVDRIGLVINYDMPFDREAYV
HRIGRTGRAGRNGEAILFVNPRERSFLSNLERAVGQPIEKMDIPDNDLINNNRIKKLQAK
LIKAASTERDNPEEANILEELIKNVEKELDIDPKDLTLAALNLAVGFNALLEKGNEDWIR
QSAQRNTRNDRRDNNKFKQRRRGDFDNNRLEDEMDRFRVEVGHRDRVKPGNLVGAIANEA
GLKGRSIGRIRIFENYSLVDLPKQMPDKVFQALKKVKVMNRELQINRAD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataaaaatccacatgaggattcctcatgtccagtagaacaagatgttctcgag
gaatcttctgaggaaatattagaggaaattgagcaaaattcagaaaatggattttctgaa
tttaattttagtgaagaactaattcaaacaatctctgataaaggctactcatcgcctact
ccgattcaaaaagctgcaattcctgaattgcttcttggtagagatttagttggacaagct
caaaccggtacagggaaaaccgccgcatttgcgttaccaatcctagagaggttgaaaaag
aatgtaggacatccacaagttttagtacttgctccaacccgcgagttggctatgcaagta
gctgaatcatttcgaacatattcggcaggtcatccgcattttaaagtgcttgcaatatat
ggaggctctgatttccgaaatcaaatcaacactctcaggaggggagtcgatgtagtcgta
gggactccgggacgagtcatggatcacatgcgtcaaaagactctaaatactagtcatctg
agttgtttagttctagacgaagctgatgaaatgttaaggatggggtttattgatgacgtt
gagtggattttagaacaattgccagaggagagacaactagttttattctcagcgacaatg
ccatctgagatcagaagattatcaaaaaaatatttaaatagtcctgcagaaataactata
aaagcaactgaattgaaagaaaggcttatcaggcaaaggtatataagcgttcaaaatgtt
tataaagttaatgcacttcaaagagtacttgaagctgtatcagaagaaggggtaataata
tttgctagaacaaaagctattacaatcgtagtagctgaaaaattagaatcatatggatat
aacgtagctgttttaaatggagatattcctcaaaatcaaagggaacgaactgttgaaaga
ttaagacaaggatctatcaatattttagtagctacagatgtcgcagcaagaggtcttgat
gtagatcgaattggtttagtaataaattacgatatgccatttgatcgcgaagcatatgtt
catagaattggcagaactggacgtgcaggaagaaatggtgaagcaattctttttgttaat
ccaagagaaagatcatttttaagtaatcttgaaagagcggtaggtcagccaattgaaaaa
atggatattccagacaatgaccttatcaacaataaccgaattaagaaattacaagcaaaa
ttaataaaagccgcctcaacagagagagacaacccagaagaagcaaatattttagaagaa
ttaataaaaaatgttgaaaaagaattagatatagatccaaaagacttaacacttgccgca
ttaaatttagcagttggttttaatgcactccttgagaaagggaatgaggattggatcaga
caatcagctcaaaggaatacaagaaatgatcgcagagataataataaattcaagcaacgt
agaagaggtgattttgataacaacaggcttgaagatgaaatggacagattcagggttgaa
gttggacaccgagatagggttaagcctggaaatctagttggagcaattgccaacgaagca
ggactgaaagggagatcaataggaagaataagaatatttgaaaattacagcctagtagat
ctgccaaaacaaatgcctgataaagtttttcaagccctaaaaaaagtcaaagtaatgaat
agagaattacagataaacagagcagactaa
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