Passer montanus (Eurasian tree sparrow): 120496101
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Entry
120496101 CDS
T07277
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmoa00536
]
120496101 (COL13A1)
Glycosaminoglycan binding proteins [BR:
pmoa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120496101 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120496101
NCBI-ProteinID:
XP_039552124
LinkDB
All DBs
Position
Unknown
AA seq
797 aa
AA seq
DB search
MLEEKSWKGVDEAAFDRGCVAPPRTGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLNEKLKFHLPRHREVRDTYQRC
NCPAGPPGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPI
GLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKR
RTFQGEQGQAGIQGPPGPPGPPGPPGPAGPEGIPGHPGPVGPPGRAGEPGKPGRDGKGLP
GPPGPKGDAGIQGYPGRKGEVGESGLPGARGLPGASGPKGEKGDAGIKGERGMPGLPGRH
GSKGAPGTAAAGMKGEPGTPGEKGDSGVPGRMGPPGLPGKRGQRGEKGRAGDPGIPGLPG
PKGEKGIAENALVGAKGEPGPPGLPGPPGPKGEAGDVGQPGAAGSQGEKGERGSPGDQGP
MGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPG
PPGHDGEKGPRGKPGEVGPPGPQGLPGKDGPAGMKGEPGHVGVRGEKGDKGEPGQAGSPG
LDGPTGEKGEQGDQGIPGPPGLPGPIGLPGLTISGPPGPQGPPGPPGLQGVPGPKGEAGI
DGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGV
AGPMGPAGLPGLQGLPGDKGVRGLRGFKGEKGEPGLPGLDGLDAPCPLVWCTFPFLHARL
LFGSWCCFLIPPNSCMP
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggcgtcgacgaagcagcttttgacagggggtgtgtg
gctccccccaggaccggcgatggggagagatgctgccgcctccctctcctgctgggctcg
gggctgcccggcgtgtccctgctctctctggtgctgagcctcttgctgtactttcggacc
tctgatctgcagtcccgggtgtcccacttggaagcggacagacccacacagctccctgcc
tggctctcagcagaccaaatggagacagctattttgggaagagttgaccaactgctcaat
gagaaattgaagttccacttgccaagacatcgagaagttcgagacacgtaccagcgatgc
aactgcccggcaggtccacctggggacaaaggtgcgatgggaatccctgggcggccggga
ctaaaagggcaatctggagagaagggtgctccaggagaagctggcatgtccatcattggg
ccccgtggtccacccggacagcctggaacaagaggttttcctggattcccgggccctatt
ggcttggacggcaaaccggggcatcctggacagaagggagagatgggtgctgcaggtccc
aggggacaacctggacccccaggacaaaaaggagagaagggtcagtgtgcagagtacccg
cacaggctgctgcctcttctcaattccgtgcggctggctccacctccggtcataaagaga
cgcactttccagggtgaacaaggacaggcggggatccaaggtcccccggggccccctggt
ccaccaggaccccctggaccagctgggcccgaaggaatcccaggacatcctggaccagtt
ggaccccctggcagagcaggagaacctggaaagcctggcagagatggaaagggcttacct
gggcctcctggaccaaagggagatgctgggattcagggataccctggcagaaagggtgag
gtgggcgagtcaggcctgcctggtgcccgtggcctccctggagcctctggccccaagggt
gaaaaaggggacgctggcataaagggggagagaggcatgccagggctgccaggaagacat
ggctctaagggcgctcccgggacggctgctgcagggatgaagggcgagcctgggactcca
ggagaaaagggagattctggagtgccagggaggatgggccccccaggtttgccagggaag
agggggcagcggggtgagaagggacgagctggtgaccctggaattcctggacttcctggc
ccaaagggagagaagggaattgctgagaatgccttggtgggagctaaaggagaacctggc
cctccaggtctgcctggaccccctggaccaaagggagaagctggtgatgttggtcagcct
ggtgctgcaggatcacagggagaaaagggggaacgtggttcaccaggagaccagggaccc
atgggcccaaggggccccaaaggagagcctgggaaggatgaaatgatggactatgatggg
aacatcagtgaagctctccaggaaatacgaactttggccttgatgggacccccaggacgt
ccaggtgtggctggacccccagggccaccaggacagaagggtgaaattggcttgccaggt
cctccaggccacgacggagaaaagggaccacgtggcaagcctggagaagtggggccccct
gggcctcagggactgccaggaaaggatggacctgctgggatgaagggagagccaggccac
gtcggggtcagaggagagaagggtgacaagggggagccaggacaagcaggctcaccgggt
ctagatggccccactggagagaaaggcgaacaaggtgaccaagggataccaggaccacca
ggattgccagggcccattggacttccaggactgacaatatctgggccccctggaccccaa
gggcctccaggacctccaggtcttcagggtgttccaggacccaagggggaagcagggatt
gatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactggga
ttacccggtgcttcaggtttagacggcaggcctggaccaccgggtattccaggaccaatt
ggggtttcgggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagtt
gcaggaccaatggggccagcagggcttcctggtttacaaggcctacctggtgacaaggga
gtccggggtctgcgaggttttaaaggcgagaagggtgagccggggttacctgggctggac
ggcctggatgccccttgcccattggtatggtgtaccttccctttcctgcatgctcgtttg
ctttttggctcttggtgctgttttctgatccccccaaacagctgcatgccctag
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