Passer montanus (Eurasian tree sparrow): 120498360
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Entry
120498360 CDS
T07277
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmoa04147
]
120498360 (COL18A1)
00535 Proteoglycans [BR:
pmoa00535
]
120498360 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pmoa00536
]
120498360 (COL18A1)
Exosome [BR:
pmoa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120498360 (COL18A1)
Proteoglycans [BR:
pmoa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120498360 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pmoa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120498360 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120498360
NCBI-ProteinID:
XP_039556888
LinkDB
All DBs
Position
Unknown
AA seq
1766 aa
AA seq
DB search
MAPPRLGFLLLLTCCFSCSKTQFLDWVWDSTKITGSPAVPGEGIPASPPTPAAAPSPSPG
MWGGEVAGNVTTPQQQEPDPAAAAPVGEGAAAKTTEHWDRNATGLVESTVWPSIAPLHSM
SPAPGQQVASSPTDDPQLLGTGTHKDPQLPGSGTTEDLQLQGSGNTEDPQLLWSETSKDP
QLLWSGATEDLQLRETGTTEHLLLLRMSTTEDGQFLRSVTPKDPQLLGTGTTEDLKLLGS
GTTENPQLLRMGTTDDPQLLRSGTSEDLQLLGLGTTENPQLLRMGTTENPQLLRLGTTEN
PQLLRMGTTENPQLLRLGTTEDPQLLGMMSTADLHLLVTGHTKDPQLLGTGTTEGPQPLG
TETTEDPQLLGTRTSKDPQLPGMRTTENLQFLVMRNTELLRTATTENPELLENTENPLLL
RTVTTENPEFLGTGTPTAMETRVSLQRPAGLQPESLSAEISLLELIGDPPTEEIHRIYGP
DNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVG
VKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVVLYLDCEE
HERVHFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDD
AEVSGDFGSGMEGGQQPSGKVEGIPGLLDAVPVTSPPVVGGSGPRSGGGSPQQAERTRVE
ETLRVSTGGAGRKGEKGEKGERGLKGDSGTSGIVGPDSVKGQKGEKGDLGVKGSAGFGYP
GSKGQKGEPGDPGPPGTLSRHADGSLVEQVTGPPGTPGKDGAPGRDGEPGDPGEDGKPGE
MGPPGFPGIPGEPGLKGEKGDPGVGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGFAG
DLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNHTDLLGPPGLPGRDGIPGPPGPVGPQG
PPGRDGEVGQPGPKGEQGDMGDLGLPGLPGPKGNKGEIGPAGPPGEMGLAGLPGPIGPRG
QPGPPGPPGPPGLGYEAGFGDMEGSGLSFTPGPPGPEGPQGVPGLPGVKGEVGSPGQPGL
PGPKGDAGMPGMDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQV
VSVSSEDKSLVAFPGPEGRPGRAGFPGPVGAKGDQGPTGPQGAPGLKGEKGEPGVIISPD
GTVVTAKVKGEKGEPGLQGPMGPLGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADV
LGLRGPPGPPGPPGPPGPPGSIVYNNGNTFSDSSHPAFPGFHQFSGQKGEKGDTGPPGPP
GQFPYDVSHFGTSLRGDKGDAGPKGEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLPGPKG
DSIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGP
PGTNGMSLGLQAIPTYQAMLSAAHELPEGSLIFLTDRQELYVRLRGGFRRVLLEEHNLIP
SSALDNEVYDKPPTLHYAGPQPRGPLHPLRNHVPSATARPWRGDEVVANQHRLPEQPLLH
HQHELINGYYIHRRPDPAPVATHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQAR
QVGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLRDEVLFNNWEALFTGSGAPLRTGA
RILSFDGRDVLRDAGWPQKSVWHGSDAKGRRLPESYCETWRTEERAVTGQASSLASGKLL
EQAASSCQHTFIVLCIENSFMTATKK
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgcttggggtttctgctccttctgacttgctgcttctcctgctccaaa
acacagttcctggactgggtttgggacagcacgaagatcacaggaagcccagcagtaccc
ggtgagggaatcccggcgtcgccgccaaccccagcagcggctcccagcccgtccccaggg
atgtggggtggcgaggtggcaggaaatgtcaccaccccacagcagcaggagccagatcct
gctgcagcagcacctgtgggtgagggagctgcagccaaaaccacggagcactgggacagg
aatgccacagggctggtggagagcacggtgtggccaagcattgctcctctccacagcatg
tcacctgccccaggacagcaggtggccagcagccccaccgatgacccccagctcctgggg
acagggacccacaaggacccccagctgccggggtcagggaccactgaggacctgcagctc
caggggtcagggaacactgaggaccctcagctcctgtggtcagagacctctaaggacccc
cagctcttgtggtcaggggcgaccgaggacctgcagctccgtgagacagggaccactgag
cacctgctactcctgaggatgagtaccactgaagacggccagttcctgaggtcagtgacc
cccaaggatccacagctcttggggacagggactactgaggacctgaagctgctggggtca
gggaccactgagaacccacagctcctgaggatgggaaccactgatgacccccagctcctg
aggtcagggacttctgaggacctgcagctgctggggttgggcaccactgagaacccacag
ctcctgaggatgggaaccactgagaacccacagctcctgcggctgggcaccactgagaac
ccacagctcctgaggatgggaaccactgagaacccacagctcctgcggctgggcaccact
gaggacccacagctcctagggatgatgagtactgcagacctacatctcctggtgacgggg
cacaccaaggacccacagctcctggggacaggcaccactgagggcccacagcccttgggg
acagagaccactgaggacccacagctcttggggacaaggacctccaaggacccacagctc
ccaggcatgaggaccactgagaatctgcagttcctggtgatgaggaacactgagctcctg
aggacagcaaccaccgagaacccagagctcctggagaacactgagaaccccctgcttctg
aggacggtgaccaccgagaacccagagttcctggggacaggaactcctacagcaatggag
acacgggtgtccttgcagagaccagcaggtctccagccagagagcctgagtgctgagatc
agcctgctggagctgattggggacccaccgacggaggagatccacagaatttatggcccc
gacaacaaccctggttatgtctttggtcccaacgctaacacgggccaggtggcccggtac
cacctgccgagccctttctaccgggacttctcgctgctgttccacatccagcccaccacg
ccccgggccggtgtgctctttgccgtcacggactcctcgcagagcatcatctacgtgggc
gtcaagctctcagagctgcgtgcgggccagcagcagatcatcttctactacacagagccg
ggctcgcccagctcctacccggccgccaccttcactgtgcccactctgctcaaccagtgg
acgcgcttcgccatcagtgtggaggaggaggaagttgtcctctacctggactgtgaggag
catgagcgcgtccacttcgagcgctccccagatgagatggagttggaagagggctccggg
ctctttgtcgctcaggctggaggggctgacccggataaataccagggggtgattgcagat
ttgaagctccgaggggaccctcgggcagccgagcgccagtgcgaggaagaggaggatgat
gcagaggtctctggggattttggcagtgggatggaaggtggacagcagccctcaggcaag
gttgagggtatcccagggctgctggatgctgtccccgtgacctccccccccgtggtgggg
ggcagtggcccgaggagtggtgggggatccccgcagcaagccgagaggaccagagtggag
gagacactgcgggtctccacgggaggcgccggtcggaaaggcgaaaagggggagaagggg
gagcgtggcttgaaaggggactcagggaccagtggcattgtagggccagacagtgtcaag
ggtcaaaagggggagaaaggagacctgggtgtcaagggcagtgctggatttggctatcct
ggctctaagggccaaaaaggagagccaggtgaccctggaccccctggaaccctctctcgg
catgctgatggctcgttggtggagcaggtcactggccctccagggacaccggggaaggac
ggagcccctggcagggatggcgagcctggagatcctggagaggacggcaagcctggtgaa
atggggcccccggggttccctgggataccgggggagccgggcctgaagggggagaagggt
gacccaggtgtggggccgaggggaccccctggaccacctggccctccgggaccaccagga
ccctcctccaagaacgacaagctgaccttcattgacatggagggctctggcttcgctggt
gacctggagagcctgcggggtccacgagggccacctggtcccccagggccacctggcgtg
cccggtttgccaggggagccaggacggtttgggatgaaccacacggacctgctgggacca
cctgggctgccgggcagggatgggatccctgggcccccggggccagtgggtcctcagggt
cctccaggaagagatggggaggttggacagccggggcccaaaggagagcagggcgatatg
ggtgacctcggcctccctggcctaccaggacccaagggcaacaaaggagaaatcggacca
gcaggacccccaggagaaatgggcttagctggtcttcccgggcccatcggaccccgaggg
cagccagggccccccggccccccgggaccaccggggctgggctacgaggctggatttggt
gacatggagggctcggggctgtcattcactcctggaccacctgggcctgaaggaccacag
ggtgtgccaggactgccgggggtgaagggagaggtcggcagccccggacagcctggcttg
ccaggaccaaagggagatgctggcatgcctggcatggatggccgccctggcctggagggc
ttccctggaccacagggacccaaaggtgacaaaggcagcactggtgagaagggagagcga
ggccaagatggagtggggctgcctggcccccctggcccacctggtccccctggacaggtt
gtcagtgtctccagtgaagataagtccttggtggcttttcctggtccagagggcagacca
ggccgcgctggcttcccgggcccggtgggagcaaaaggcgaccaggggccaactggtccc
cagggtgccccggggttgaagggggagaagggggagcccggcgtcatcatcagccctgat
gggaccgtggtcactgccaaggtgaaaggagaaaagggggagccagggctgcagggccca
atgggaccattgggtcccccaggacgagcagggatgaagggagagatcggctttccgggc
agacccggacgtcctggcatgaacgggctgaagggcgagaagggtgaccctgcagacgtg
ctgggcttgcggggtcccccaggccccccaggcccccctgggccccctgggccacctggc
agcatagtctacaacaatggcaataccttcagtgactccagccacccggcgttccctggt
ttccaccagttctcaggacaaaagggagagaaaggtgacactggacccccaggaccccca
ggccagttcccctatgatgtgagtcacttcggtaccagcctgcggggcgacaagggggat
gcaggtcccaagggtgagaagggcgagccaggcagcaccccactctacagtcctggagtc
tctggacttccagggcctccagggccccagggataccccgggctgccaggtcccaagggg
gacagtattgttgggccaccagggcctccaggacctcagggtccccctggtatcggatac
gaggggcggcagggcccccctggccctcctggtccgcctgggccaccctccttcccaggt
ccccacagacaagctgtcagcatccctggacccccaggaccaccaggaccccctggacca
ccaggcaccaacgggatgtccttggggctccaggccatacccacgtaccaggcgatgctg
agtgctgcacacgaactgcccgagggcagcctcatcttcctgacagaccggcaggaactc
tacgtccgcctgcgtgggggcttccgcagggtgctgctggaggagcacaacctgatcccc
agttcggctctggacaacgaggtgtatgacaagccgcccaccctccactacgctggcccc
cagccccgcgggcccctgcacccgctccgcaaccacgtcccctcggccactgcccgtccc
tggcgtggggatgaagtggtggccaaccagcaccgcctgcccgagcagcccctgctccac
caccagcacgagctcatcaatgggtactacattcaccgccggccagatcctgcccctgtg
gccacccatgtgcaccaggacttccagcctgctctgcacctggtggccctgaacaccccg
ctgagcggtggcatgcgtggcatccggggcgccgatttccagtgcttccagcaagcccgg
caggttgggctggctggcaccttccgtgccttcctgtcctcgcgcctgcaggatctctac
agcattgtgcgcagggccgaccgcgctgctgtccccatcgtcaacctccgggatgaagtg
ctcttcaataactgggaagcccttttcacgggcagtggggccccgctgagaactggcgcc
cgcatcctctcctttgatggccgggatgtcctgcgggatgcgggatggccacagaagagt
gtctggcatggctcggatgccaagggtcggcgcctgcctgagagctactgcgagacatgg
cggacagaggagcgcgcggtcactggccaggcttcctccttggcctctggaaaactgctg
gagcaggcagccagcagctgccagcacaccttcattgtcctctgcattgagaacagcttc
atgaccgccaccaaaaagtga
DBGET
integrated database retrieval system
