Passer montanus (Eurasian tree sparrow): 120499129
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Entry
120499129 CDS
T07277
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120499129 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoa03041
]
120499129 (SNRNP200)
Enzymes [BR:
pmoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120499129 (SNRNP200)
Spliceosome [BR:
pmoa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120499129 (SNRNP200)
Complex C
U5 SnRNP specific factors
120499129 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
120499129
NCBI-ProteinID:
XP_039558555
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEVELLLGPTDDTRYHVLVNLGKKIT
DYGGDKDIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDLEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLESMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGADEQLVSVEKLPKYAQAGFEGFKT
LNRIQSKLFRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFSKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDM
LNAEAVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKADPLLEQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETVQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAVMKHSPKKPVL
VFVPSRKQTRLTAINILTTCASDVQRHRFLHCAEKDLVPYLEKLSDPTLKETLVNGVGYL
HEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNISAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLLEIISNAAEYENIPI
RHHEDNLLRQLSQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERTALLQLPEAQIADVARFCNRYPNIELSYEVGDRDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPAAG
TQHYTLFFMSDAYMGCDQEYKFSVDVKEAESDSESD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcccgtagcctgcagtatgagtacaaagcgaactccaacctggtg
ctgcaggccgaccgctcgctgatcgaccgcacgcgccgggacgagcccacgggggaggtg
ctgtccctggtggggaagctcgaggggacccgcatgggggacaaggcgcagagaaccaag
ccccagatgcaggaggagaggagagccaagaggaggaagagggacgaggacaggcacgac
atcaacaagatgaagggctacaccctgctctccgagggcatcgacgagatggtgggcatc
atctacaagcccaagaccaaggagacgcgggagacctacgaggtgctcctcagcttcatc
caggctgccctgggcgaccagccccgggacatcctgtgtggagcagctgacgaggtgctg
gccgtgctgaagaacgagaagctgcgggacaaggagcggcgcaaggaggtggagctgctg
ctgggccccaccgacgacacgcgctaccacgtgctggtcaacctgggcaagaagatcacc
gactacggcggggacaaggacatccagaacatggatgacaacattgacgagacctacggg
gtgaacgtgcagttcgagtccgacgaggaggagggggacgaggacatctacggggaggtt
cgggacgaggcgtcggacgatgacctggagggggacgaggccgtggtgcgctgcacgctc
tcggccaacctggtggcctcgggggagctgatgagctccaagaagaaggatctccacccg
cgggacatcgacgccttctggctgcagcgccagctcagccgcttctacgacgacgccatc
gtctcccagaaaaaggcagacgaggtcctggagatcctcaagactgccagtgatgaccgg
gaatgtgagaaccagctggtgctgctgctgggcttcaacaccttcgacttcatcaaggtc
ctcaggcagcacaggatgatgatcctgtactgcaccttgctggccagcgcgcagagcgag
gcggagaaggagcgcatcatgggcaagatggaggccgaccccgagctctccaaattcctc
taccagctccacgagacggaaaaagaggatctgatccgggaggagcgctcccggcgggaa
cgcgtgcgccagtcccgcatggacaccgacctggaatccatggatctggaccagggggga
gaggctctggctcccaggcaggtgctggatttggaggatctggtgtttgcccagggcagt
cacttcatggccaacaagaggtgccagctcccggatggatccttccggagacagcgcaag
ggatatgaggaagttcatgttcctgccctaaaacccaaaccctttggggctgatgagcaa
ttggtttctgtggaaaaacttcccaagtacgcccaagctggctttgaaggcttcaaaacc
ctcaacaggatccagagcaaactgttccgggcggcgctggagtccgacgagaacctgctg
ctctgtgcccccacgggcgcggggaagaccaacgtggcgctgatgtgcatgctgagggag
atcggcaaacacatcaacatggacggcaccatcaacgtggacgacttcaagatcatctac
atcgcgcccatgaggtccctggtgcaggagatggtcgggagcttcagcaagcgtttggcc
acctacgggatcacggtggccgagctgaccggggaccaccagctgtgcaaggaggagatc
agcgccacgcagatcattgtgtgcacgcccgagaagtgggacatcatcacccgcaagggc
ggcgagcgcacctacacccagctggtgcggctggtcatcctggatgagatccatctcctc
cacgacgaccgcgggcccgtgctggagtcactggtggccagggccatccgcaacatcgag
atgacgcaggaggacgtgcggctggtggggctcagcgccacgctgcccaactacgaggac
gtggccaccttcctgcgggtggacccggccaagggcctgttctacttcgacaacagcttc
cggcccgtgcccctggagcagacctacgtgggcatcacggagaagaaggccatcaaacgc
ttccagatcatgaacgagatcgtctacgagaagatcatggagcacgccggcaagaaccag
gtgctggtgttcgtgcactcgcggaaggagaccgggaagacagcgcgggccatccgggac
atgtgtctggagaaggacacgctggggctcttcctcagggaggggtcggcctccaccgag
gtgctgcggacagaggctgagcagtgcaagaacctggagctgaaggatctcctcccctac
ggcttcgccatccaccacgccgggatgacgcgcgttgaccgcaccttggtggaggatctc
ttcgccgacaaacacatccaggtcctggtgtccacggccacgctggcctggggtgtgaac
ctgccggcgcacacggtgatcatcaaaggcacgcaggtgtacagcccggagaaggggcgc
tggaccgagctgggagccctggacatcctccagatgctgggccgtgccgggaggccccag
tatgacacgaaaggagaaggaattctcatcacttcccacggagagctccagtattacctg
tccctgctcaaccagcagctgcccatcgagagccagatggtggccaagctcccggacatg
ctcaacgctgaggccgtgctcgggaatgtccagaatgccaaggacgcggtgaactggctg
ggctacacctacctgtacatccggatgctgcggtcgccgaccctttacggcatctcccac
gacgacctgaaggcggatccgctcctggagcagcggcgcctcgacctcgtccacaccgcg
gccctgatgctcgacaagaacaacctggtcaagtacgacaagaaaaccgggaatttccag
gtgacggagctgggccgcatcgccagccattactacatcaccaacgagacggtgcagacg
tacaaccagctgctgaaacccaccctgagtgagatcgagctcttccgcgtcttctccctg
tcctcagagttccgcaacatcaccgtgcgcgaggaggagaagctggagctgcagaagctt
ctggagcgagtcccgatcccagtgaaggagagcatcgaggagcccagtgccaagatcaac
gtgctgctccaggccttcatctcgcagctgaagctggagggcttcgccctcatggccgac
atggtctacgtcacccagtcggccgggaggctgatgagagccatctttgagatcgtcctg
aaccgcggctgggcccagctcaccgacaagaccctcaacctctgcaagatgatcgacaag
cgcatgtggcagtccatgtgtcccctgcgccagttcaagaagctgcccgaggaggtggtg
aagaagattgagaagaagaatttcccctttgagcgcctctacgacctcaaccacaacgag
atcggagagctgatccggatgccgaaaatggggaaaaccatccataaatacgtgcacctg
ttcccgaagctggagctgtccgtgcacctgcagcccatcacgcgctccacgctcaaggtg
gagctcaccatcgcgcccgacttccagtgggacgagaaggttcatggctcctctgaggcc
ttctggatcctggtggaggatgtggacagcgaggtgatcctgcaccacgaatatttcctg
ctcaaggccaaatatgcccaggatgagcacctggtgacattttttgtgcccgtcttcgag
cccctgcccccccagtatttcatccgggtggtgtccgaccgctggctctcctgtgagacc
cagcttcccgtttccttccggcacctgatccttccggaaaaatacccgccgcccacggag
ctgctggacctgcagccgctgccggtgtcggcgctgcgcaacagcgccttcgagagcctc
taccaggacaagttccccttcttcaaccccatccagactcaagtgttcaacacggtgtac
aacagcgacgacaacgtcttcgtgggcgcgcccacgggcagcggcaaaaccatctgcgcc
gaattcgccatcctccgcatgctcctgcagaactccgagggccgctgcgtctacatcacc
cccatggaggccctggccgagcaggttttcatggattggtacgagaaattccaggagcgc
ctcaacaagaaggtggtgctgctcacgggggagaccagcacggacctgaagctgctggga
aaagggaacatcatcatcagcaccccggaaaagtgggatatcctctcccgccgctggaag
cagcgcaagaacgtccagaacgtcaacctgttcatcgtggatgaagtgcacctgatcggg
ggcgagaatgggcccgtgctggaggtgatctgctcgcgcatgcgctacatctcgtcgcag
atcgagcggccgatccgcatcgtggcgctgagctcgtcgctgtccaacgccaaggacgtg
gcacactggctgggctgcagcgccaccgccaccttcaacttccaccccaacgtgcgcccc
gtgcccctggagctgcacatccagggtttcaacatcagccacacgcagacgcggctgctg
tccatggccaagcccgtgtaccacgccgtgatgaagcactcgcccaaaaaacccgtcctg
gtcttcgtcccgtcccgcaaacagacccggctcactgccatcaacatcctgaccacctgc
gcctctgacgtccagcgccacaggttcctgcactgcgctgagaaggacctggtgccgtac
ctggagaagctgagcgaccccacgctgaaggagacgctggtgaacggcgtgggctacctg
cacgaggggctcacggccatggagcggcgcgtggtggagcagctcttcagctccggagcc
gtgcaggtgatggtggcctcgcgcagcctctgctggggcatgaacatctcggcccacctg
gtgatcatcatggacacgcagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgtgctgcagatggtcggccacgccaaccgcccgctgcaggacgacgagggg
cgctgcgtcatcatgtgccagggctccaagaaggatttcttcaagaagttcctgtacgag
ccgctgccagtggagtctcacctggaccactgcatgcacgaccacttcaacgccgagatc
gtcaccaagaccatcgagaacaagcaggacgccgtggactacctgacctggaccttcctg
taccgcaggatgacccagaaccccaactactacaacctgcaaggcgtgtcccaccggcac
ctgtcggatcacctgtcggagctggtggagcagaccctcagcgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggcgcccctcaacctgggcatgatcgccgcc
tactactacatcaactacaccaccatagaactgttcagcatgtccctcaacgccaagacc
aaggtgcgggggctgctggagatcatctccaacgccgccgagtacgagaacatccccatc
cggcaccacgaggacaacctgctgcgccagctgtcccagaaggtgccccacaaactgacc
aaccccaaattcaacgacccccacgtcaagaccaacctgctgctccaggcccacctgtcg
cgcatgcagctgagcgccgagctgcagtccgacaccgaggagatcctcagcaaggccatc
cggctgatccaggcctgcgtggacgtgctctccagcaatgggtggctgagcccggcgctg
gccgccatggagctggcccagatggtcactcaggccatgtggtccaaggactcgtacctg
aagcagctgccccacttcacctcggagcacatcaaacgctgcacggacaagggcgtggag
agcgtatttgacatcatggagatggaggacgaggagcgcacggcgctgctgcagctgccc
gaggcgcagatcgccgacgtggcgcgcttctgcaaccgctaccccaacatcgagctgtcc
tacgaggtgggggacagggacagcatccgcagcggtggccccgtggtggtgctggtgcag
ctggagcgtgaggaggaggtcacggggccggtcatcgcccccctgttcccgcagaagcga
gaggagggctggtgggtggtgatcggtgactccaagtccaacagcctcatctccatcaaa
cgcctgacgctgcagcagaaggccaaggtgaagctggacttcgtggcgccggcggcgggc
acgcagcactacacgctgttcttcatgagcgacgcctacatgggctgcgaccaggagtac
aagttcagcgtggacgtcaaggaggccgagagcgactccgagtccgactga
DBGET
integrated database retrieval system