KEGG   Passer montanus (Eurasian tree sparrow): 120500808
Entry
120500808         CDS       T07277                                 
Symbol
SEH1L
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
pmoa  Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03013  Nucleocytoplasmic transport
pmoa04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:pmoa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120500808 (SEH1L)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    120500808 (SEH1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmoa03019]
    120500808 (SEH1L)
   04131 Membrane trafficking [BR:pmoa04131]
    120500808 (SEH1L)
Messenger RNA biogenesis [BR:pmoa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120500808 (SEH1L)
Membrane trafficking [BR:pmoa04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    120500808 (SEH1L)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_WDR3_2nd Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 WDR55 Beta-prop_EIPR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 120500808
NCBI-ProteinID: XP_039562169
LinkDB
Position
Unknown
AA seq 419 aa
MFVARSIAADHRDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSP
MIAVGSDDNSPNILAKVQIYEYNENTRKYAKAEALMTVTDPVHDIAFAPNLGRSFHILAV
ATKDVRIFTLKPLRKELTSSGGLTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGIFNASLGSANTSLQNSLNGSSASRYFF
PPLDSPRAGSRWSSHAQLLPPPPLIEQSCDADTANLQYPHPRRRCVSRPLNLLPENEGV
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgttcgtggcgcgcagcatcgccgcggatcaccgcgacctcatccacgatgtgtccttc
gacttccacgggcgccgcatggccacctgctccagcgaccagagcgtcaaggtctgggac
aaaagtgaaaatggagattggcattgcactgccagctggaagacacacagtggatcagtg
tggcgtgtgacatgggcccatcctgaatttgggcaggtcctggcttcctgctcctttgat
agaacagcagctgtatgggaagaaatagtgggagagtcaaatgataaactccggggccag
agtcactgggtcaagaggaccactctagtagacagtagaacatctgttacagatgtgaag
tttgctcccaagcacatgggtcttatgttagcaacctgttcagcagatggagttgtaagg
atctatgaagctccagatgtgatgaatctcagccagtggtcactgcagcatgaaatctca
tgtaagctcagctgcagttgtatttcttggaatccctcaagctctcgagcacattctcca
atgatcgctgtaggaagtgatgacaacagtccaaatatactggctaaggttcaaatttat
gaatataatgaaaatactaggaaatatgcaaaagcagaagctctgatgacagtcacagat
cctgtacatgatattgcgtttgctccaaatctgggaagatccttccacatcttggctgta
gcaaccaaagacgtacgaattttcacactaaaacctctaaggaaagaattgacttcatca
ggaggattaacaaaatttgaaattcatattgtggcacagtttgataatcacaactcccag
gtgtggcgagtgagctggaatattacgggcacagtgcttgcctcctctggtgatgatggc
tgtgttaggctctggaaggctaattacatggacaactggaagtgtactggtatactgaaa
ggtaatgggagcccagtgaatggtagttctcagcagggaatttttaatgcctctctaggt
tcagccaatacaagtctgcagaattcactaaatggatcatctgccagcaggtatttcttt
ccccctctggattccccacgggctggatcgagatggtccagtcatgcccagctccttcct
cctcctcctctgatagagcagtcttgtgatgctgacactgccaacctccagtatcctcac
cctcgcagacgatgtgtatctcggcctcttaatcttttacctgagaatgaaggggtttaa

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