Passer montanus (Eurasian tree sparrow): 120500897
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Entry
120500897 CDS
T07277
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmoa03041
]
120500897
Enzymes [BR:
pmoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120500897
Spliceosome [BR:
pmoa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120500897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
AAA_19
Ank_2
nSTAND3
AAA_22
HA2_N
ATPase
Ank_4
PhoH
AAA_23
ResIII
UvrD-helicase
AAA_16
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
120500897
NCBI-ProteinID:
XP_039562327
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRHRRVPRRQPGGAAGGSIAAAAVRARAEALWEVGVDEEVEMAVQLALERFRSGDEAEM
EFPSSFTSSERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSEGHAVMTCDLALRTKH
AVRSLIQSFPVTNKERTELLPRTERGHACAVESENKEVNKTSGRLNDGIPQVPVKRGESE
FDSFRQSLPVLEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGTPCRVFC
TQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGDS
TLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNNLKLIISSAALDANLFIRYFGSCPV
IHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQKNTLAEWCSAQENTNKLT
SRRQKSLPRTNEEYKWLDEGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDIDAF
TQVLNLILTENVSVDYRHSETGATALMISSGRGFLSQVEQLISMGASIHCKSSNGWMAVD
WARRFGHTEVVDLLESYSASFGFGNLDESSLVQRSGSDLSTEDRELLTAYHNSFDDEKVD
LDLIMHLLHSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHSSV
QTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSRVTMLKM
GWISKASAIQRKGRAGRCQPGVCFHLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLLAP
INCPIVDFLMKAPDPPPAVTVRNGVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTNS
ENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKKIAPANGQAA
AIQALPTDWLIYDEMTRAHKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSSFRGGGV
SNDSSDSEMEDKTTANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKPW
SQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKSSTET
ELSDSSNAEKVSVKSTSPALHQPKKYKEKDILLSKRASDDRSAQSSMKPADSSSYSSPCA
SPSSPVSGKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPNNERKLNGAFWE
SSVVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVDWIRKESIPFQFAHH
LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLTEHAK
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtcccgcggcggcagcccggcggggccgcggggggctcaatt
gccgccgccgcggtgcgcgcccgggccgaggccctctgggaggtcggcgtggacgaggag
gtggaaatggcggtgcagctcgccctggagcggttccgaagcggggacgaggcggagatg
gaatttccttctagtttcactagtagtgaaagagcatttgttcaccggctctgtcagtct
cttggactggtatctaaaagcaaaggaaaaggagccaatcgatacctgactgtgaggaag
aaggatgtatcagagggacatgcagtcatgacttgtgacttggctctccgaacgaagcat
gctgttcggagtctaattcagagctttcctgtcacaaataaggaacgcacagaactcctg
ccgaggacagagagaggacatgcctgtgctgttgaatctgaaaacaaagaagtaaacaag
acaagtggtcgacttaatgatggtatcccccaggtcccagtgaaaagaggggaatcagag
tttgattccttcaggcagtcactaccagttcttgaaaaacaggaagaaattgtgcaaata
ataaaagacaataaaattgttttgattataggggagactggatcaggaaaaactacgcaa
atccctcaatttatccttgatgactgctacaagaatggaactccctgtcgtgtgttttgt
actcagccaagacgtttagcggctgttgctgtggctgaaagagtggcagcagaaagaaga
gagaagattggccagacaattggttaccagatccggttagaaagcagggtttctccgaaa
acactggtgacattctgcactaatgacatgctccttcgcacgctgatggcaggagacagc
accctgtccaccgtgacccatgttattgtggatgaagtgcatgagagggataggttcagt
gacttcttgctaataaaactgagagatgtgctgcaaaaccaaaataatttaaaactaatt
atttctagtgctgctctagatgcaaatctctttattaggtattttggaagttgcccagta
atacatatccaagggaggccttttgaagttaaagagatgtttctggaggatattttacga
agcactgggtatacaaacaaagagatggtgaagtacaaaaaagagaagcagcaagaagag
aaacagaagaacactcttgctgagtggtgttcagctcaagaaaacactaacaaactaaca
tctcggagacaaaaatcacttccaagaacaaatgaggagtacaaatggttggatgagggt
ggtgacacagtatttaatcaactgactgaaaaagatgtgaattgccttgaaccatggata
gtaaaggaaatggattcctgtctttctgacatctggttgcataaagatattgatgcgttt
actcaggtgttaaatctcattttaactgaaaatgtcagtgttgattataggcacagtgaa
actggtgcaactgcactgatgatttcttcagggagaggctttttgagtcaagtagaacag
ttgatcagtatgggagcaagtatccactgcaaatcatctaatggctggatggctgtggac
tgggctaggcgctttggacacacagaggttgtcgatctgttggaatcatacagtgcttca
tttggctttggaaatctggatgaaagttccctagtccaaagaagtggtagtgaccttagt
acagaggacagagaactactgacagcttatcataacagttttgatgatgaaaaagtggat
ctggatctgataatgcacttacttcacagcatctgtcatagttgtgatgcaggagcaatt
ttaatatttcttcctgggtatgatgagatagtgagcctgagggaccgcattctttttgat
gacaagagatttgctgataatgctcacagataccaagttttcatgcttcattcaagtgtt
cagactttggatcagaagaaagtgcttgaaactccaccttctggcattcgcaaaattatt
ctttctactaatatcgcagaaaccagcataacagtcaatgatgttgtgtttgtcattgat
tcaggcaaggtaaaagagaagtcttttgatgcattgagtcgtgttacaatgctaaaaatg
gggtggatttcaaaagccagtgctatccagagaaaaggcagggctgggcgctgtcagcct
ggagtctgttttcatctcttcagcaggctccgatttcagaatatgttggaatttcagtct
ccagaacttctaagaatgccacttcaggagatttgtttgtacacaaaacttctggctcca
attaactgtccaattgtagactttcttatgaaagctcctgatcctccgcctgctgtaact
gtgagaaatggtgtgcatatgcttaagaccatagatgccatggacccttgggaagatctc
actgagcttggttatcacctcactgaattacctgtagagccacaccttggtaaaatggtg
ttgtatgctgtagttctgaagtgcctggatcctgttctgaccattgcctgtgctcttgcc
tgccaagacccttttgtgctgcccacgctggcctcccaaaagcgtgcagccatgctgtgc
aggaagcgttttgctgctgggacgttcagtgaccacatggccctgctcagggctttccag
gcatggcagaaggcacgcagtgatggctgggagagagccttttgtgaaaagaacttccta
tcccaagctacaatggaaatcattgtaggaatgagaacacagttgcttggccagcttaga
gcctcaggttttgtgagagccagaggaggagctgatattagagatgtaaatactaactct
gagaactgggctgtaattaaagctgccttagtggctgggatgtatcccaatcttgtgcat
gtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcatcct
acctctgttcttggtcagtctcagtataaaaagattgccccagcaaatggacaagctgca
gccatccaggccctccctacagactggcttatatatgatgaaatgacaagagctcacaag
acagcaaacatcaggtgctgctctgttgttacacctgtcaccgtgtccctcttctgtgga
ccagccagactgccaagtaatgccttgcaggcatcttcatcctttcgagggggaggggta
tctaatgatagcagtgacagtgagatggaggacaaaacaactgctaatctggcactgctg
aaactggatgaatggctccatctcaaactggaccctgaagctgctggtatgctgttgcaa
ctcaggcagaaatggcacagtttgttcctgcgtcgtatgcgagctccttccaaaccatgg
tctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaacag
tctgcaggtctgcagcaaccttcaggaatcggccagagaccaagacctgtaacttgtgaa
gaacttcctttggcatctacatggaagtcaaccaacagcagaaaaagctcaacagaaact
gaattgtctgactcctctaatgctgaaaaggtttcagtgaaatctacatctcctgcactc
caccagccaaagaagtacaaagaaaaagacattttgctctccaaacgagcctcagatgac
agatcagctcagtcctcaatgaagcctgcagacagcagtagctattccagcccctgtgct
agtccttcttctccagtgtctggaaagggttgcaaatctccttcaccaagacaaaatatg
ccggttcggtactttataatgaaaagtagcaacttgcaaaacattgatatttctcaacag
aagggaatatggtccactacaccaaataatgaacggaaactgaatggagccttttgggag
agcagtgtggtttacttaatattttctgttcaagggtctggatgctttcagggttttgct
agaatgggatcagcaattggatgtgagaaaagtcaagactggggatctgctggttttgga
ggtgtatttaaggtggactggattcgaaaagaaagcatcccttttcagtttgcacaccat
ttgctcaacccatggaatgacagtaagaaagtgcagataagtagagatggacaggagctg
gaaccacaagttggagagcagttgctgcagctttgggaccgtattcctttggcaggaaaa
aaactgactgagcatgccaagtaa
DBGET
integrated database retrieval system
