Passer montanus (Eurasian tree sparrow): 120501088
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Entry
120501088 CDS
T07277
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120501088 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoa03400
]
120501088 (MSH6)
DNA repair and recombination proteins [BR:
pmoa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120501088 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
120501088
NCBI-ProteinID:
XP_039562714
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All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWISVKYLKPYKGSSDGET
MKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCNEPSDTEEEEEEMEEVSENASGN
SEDCNSEEDVKSHKRVMSRERAVKAKRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDTETEAESVAESPVKVPSKRKRREVKKPAKRSSLGNECSETPKRAATVSSEAK
SKLTSFAAPESFESQANAGSGGTGGFSVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTL
YVPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTW
AHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSTGHSTRFDKVVRREICRI
ITKGTQTYSVMDCDPSENHSKFLLCVKEKEDSAGTRVYGVCFVDTSMGKFHVGQFPDDRH
CSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVLL
EEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQ
ELLSQANFEEYVPVDIAPAKTMNSSSLFSRTGQRMVLDGVTLMNLEVLQNGTNGSTEGTL
LERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKMSEVCEYLKKLPDL
ERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIADFLSTLEGFKVMNEIVEFMEEF
AGDFKSRVLKQLVTRKAKNPDGRFPDLSAELTRWDTAFDHNQARKTGVITPKLGFDPDYD
GALEDIRALEDDLRKYLDKQRKLLGSKSVQYWGTGKNRYQMEIPESVISRNLPEEYELRS
SRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIAVLD
VLMSLAHYSQGGDGPLCRPVIVLPTDNAPPFLELRNSRHPCITKTFFGDDFIPNDIVIGI
KDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMAQLGCYVPAEACRLTPIDRVFTRLG
ASDRIMAGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVEELAER
IRCRTLFSTHYHSLVEDYSHCGAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKSY
GFNAARLADIPEEVIQKGHRKAKEFEKTTISLRIFRYLCQVLDGAACDANAVRKLTAMID
RL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggaaggctatccctggtggccgtgtctcatatacaaccaccccactgaaagaaccata
gtcagaggaaaaggaaaatccactcgtgtccacgtgcagttctttgatgacagccctaca
aggggttggatcagtgttaaatacctgaagccatataaaggttcatcagatggggagacg
atgaagggaggtatgttttacagcacaaagcctgaaattaaaagagccatggtgctggca
gatgatgccatgagcaaagataaaaccaagaggcttgagctggcagtatgcaatgagcct
tcagacacagaggaggaagaggaggaaatggaggaggtgagtgaaaatgcatcaggcaac
agtgaagactgcaatagtgaggaggatgtgaaaagccataagcgagtgatgagcagggaa
agagctgtaaaagccaagagaaggagagtgttggattctgacagtgaccacgatggctct
gatgtggagttcaagcctgatgggaaagaagcagcaagcagtgaggaagccagtagtgga
gtggatgaaaatgagtcttctgacacagagacagaggcagagagtgttgcagagagccct
gtaaaagtcccttctaaacgaaagagaagagaggtgaaaaagcctgctaaaaggagtagc
ttgggaaatgaatgttctgaaacacccaaaagagcagcaacagtctcttcagaagccaag
tctaagctgacatcctttgcagcacctgaaagttttgaatctcaagcaaatgctggcagt
ggaggcactggtggcttctcagtgtgggagcacgagaagcttgactggctgcaagaaggg
aagaggagagacgcgcacaggaggcgtcagggtgaccctgattacgacccctgtactctg
tatgtgcccgaggattacctcaacaagtgcacgccgggcgtgcggaggtggtggcagctc
aaaagccaaaacttcgacgctgtgatttgctacaaggtcggaaagttctatgagttgtat
cacatggacgcagtgactggcgtcaatgagctgggcctgatctttatgaagggcacctgg
gcccactcgggttttccagaaactgcgttcggccggttctccgatgtcctggtgcagaag
ggctacaaggtggcgcgcgtggagcagacggaaacgcccgaaatgatggaagcgcgctgc
aagtccacgggccactccaccaggtttgacaaggtggtgcgccgggagatctgcaggatc
atcaccaagggaacccagacctacagcgtcatggactgtgacccctctgagaaccacagc
aagttcctgctgtgcgtgaaggagaaggaggactcggccgggacgcgtgtctacggtgtc
tgcttcgttgacacctccatgggcaagttccacgttggccagttcccagacgaccgccac
tgctccaggtttaggactttggtagctcactacacccctgtgcaggtgctgtttgagaag
ggcaacctgtctgtggacacgcagaagatactgaagggctcgcttgtatcttgcattcag
gaagggctgacctcgggttcccagttctggaatgcatctaaaacactaaaagtccttctt
gaggaaggatatttcaaggagaagcagaattctgaaaatggatgttctctgccctctgta
atcaaatctctgacttcagagagtgactccctgggattaactcctggtgaaaacagtgag
ttagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgatcag
gagctgttatcacaggcaaactttgaggaatatgtcccagtggatattgctcctgccaaa
accatgaattcaagtagtttgtttagcagaactggccagcggatggtgctggatggagtc
accctgatgaacttggaagtcctgcagaatggaaccaatggaagcacagaaggtactttg
ttggaaaggattgattcttgctgtacaccatttgggaagcgactcctgaaacagtggctc
tgcgctccgctttgtaatcctaaatccatcaatgaccgtttggatgctgtcgaggacctc
ttggcagtgccagataaaatgtctgaagtctgtgagtacctcaagaaactgcctgacctc
gaaagactgctcagcaaaattcacagcatcgggtcaccactcaaaagtcagaaccatcct
gacagcagggccatcttctatgaagaactcaaatacagcaaaaaaaaaattgctgacttt
ctgtctaccctggagggattcaaagtaatgaatgaaattgtcgaattcatggaggagttt
gctggtgacttcaaatccagagtcctgaagcagctggtcacccgcaaagccaaaaatcct
gatggccgcttcccagacctgagtgcagagctcacaaggtgggacacggcctttgatcac
aaccaggctcggaagacaggagtgattacccccaagctgggttttgaccccgattatgac
ggggcactagaggatatcagagctctcgaggatgatcttcggaagtacctggataagcaa
cgcaaactgcttgggtccaaatccgtgcagtactgggggacaggcaagaaccggtaccag
atggagatcccagaaagtgtcatatcccgtaacctgcccgaggaatacgagctgaggtcg
agcaggaagggctacaagcgctactggaccaaggagatcgagaagatgctggctgccatg
gtgaacgccgaggagcgccgcgacgccgccctcaaggactgcatgaggcgcctcttctac
aactttgacaagaacagcaaggactggcagacagctgtggagtgcattgctgtgctggat
gtcttgatgtcccttgctcactacagtcaaggtggtgatggacctctgtgccgacctgta
atcgtgctgcctacggataatgctcctcccttcctggaactcagaaattcccgccatcca
tgcatcacaaaaactttctttggggatgattttattcccaacgacatcgtgataggcatc
aaggatgaaggcagcagcagtgaggcctcctgtgtgctggtaactggccccaacatgggt
ggcaaatctacgctcatgagacaggctggtctcctggtggtcatggcccagctggggtgc
tacgtgcccgcggaagcctgcaggctcacgcccatcgaccgcgtgttcacgcggctcggc
gcctccgacaggatcatggctggtgaaagtaccttctttgttgaattgagcgagacttcc
agcattctgcagcatgcaacagagcattcccttgttctcgtggatgaactgggcagaggc
acggccacgtttgacggaacagccatagcgagcgcagtggtggaggagctggccgagagg
atccggtgccggacgctgttctccactcactaccactccctggtggaggactattcccac
tgcggggccgtgcgcctgggccacatggcgtgcatggttgaaaatgagagtgaggatcca
agccaggaaacaatcacgttcctgtacaagttcattgaaggagcctgcccaaagagctac
ggtttcaatgcagcaagacttgcagatattccagaggaagtcattcagaaggggcacaga
aaagccaaagagtttgagaaaacaaccatctcactgagaatatttaggtacctgtgccag
gtgctggacggagcagcctgtgatgcaaacgcggttcggaaactcacggcgatgatcgac
cggctttag
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