Passer montanus (Eurasian tree sparrow): 120501411
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Entry
120501411 CDS
T07277
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoa03021
]
120501411 (SCAF8)
03041 Spliceosome [BR:
pmoa03041
]
120501411 (SCAF8)
Transcription machinery [BR:
pmoa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120501411 (SCAF8)
Spliceosome [BR:
pmoa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120501411 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120501411
NCBI-ProteinID:
XP_039563564
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVAQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPSSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDIAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSATVDKSTVITTQTEAFTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSPIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTGLVLPVGTVTSNLATPTLSAGSVFNPLPINKPESDDKGPHLTD
LQISASENNRSVQSDVSSTSGLGGVQPSSVSSNSGLTGEGPPSTVSSSSGLAGGVQPPSV
SSSSGIVGGVQPPTVSSNSGLAGGMQLPAVSSSSSLAGGIQPTNASSSSGLMAGVPPPNA
SSSSGLLAGVHPPGVSSSPGLLTGMQPPSVSSSSGVLAGVQPPSVSSNSGLLIMPPPNVS
TSSGLMGVPPPNISSNSGLLAMQHPAAVPNMPHLNISNQRMPGMPLIDIRPGLMPHSPGP
RFPLMQPGMPPQRTIPPPAILDPSLHPPPPRGPFPPGDIFNQTERPFGTPGRQNIDNISN
PEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVD
GREHFARPHIDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKG
FHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREIN
GNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNMPQVNGENTETESQPPTAQVQDDP
ELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaagcctttaacagcgagttgtactcgctaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaggctataaagttctac
aaacatgttgtccagagtgttgagaaattcattcaaaagtgcaaaccagagtacaaggtg
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcagtttggacaagaa
aaggatgtatttgcgccaagattcagcaataacatcatcagcactttccagaacttgtac
cgttgtcctggtgatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
cccgttgtgacccctgtcttgcccagcactacagctgctatgagcaacaatacgccaggt
acacctgtaactccagttaccccagccaatgtggcgcagagtttgcctgatccttgggtg
tctcagattgctaacacagacacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatccagcagcagaaacctcagcct
tcgctacttcaagctctggatgccggtctcgttgtccagttacaggccctcacggcacag
ctcacagctgcagctgctgctgctaacacacttaatccactggaacagagtgtctctttt
aataagaagctgatggacagatttgactttggggaagaatcagaacaaaatgaagagcct
aaaaaggaaactccctcttcccaattgccattagtaccagaatctgtgaacaactcactt
tttcaccaactagctgaacagctacagcagcaaaatttagaacatctcagacagcagctt
ctggagcagcagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagagcactcggcatcaccatcacaagggagtagtcaacaacagtttttagaagtggaa
gcaaatgtagatgattccatggatattcagcaacaggacatggatatagatgaaggtcag
gatattgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgttcaagatctcgttcaaggtcaccaagaaaacgaaggtctagatcacga
tctggttctcgtaagcggaaacacagaaaacgttcacgctcaagatcaagagaaaggaag
agaaagtcatctcggtcatactccagtgaaagaagggctagggaaagggaaaaagaacgt
cagaaaaagggattgcctcctatacgatcaaaaacactaagcgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggctacacagcaagatttaacaaacttgtttgaagaa
tttggacaaatagagtcaattaatatgatacccccaagaggatgtgcttacgtctgtatg
gtacatagacaagatgcatatcgtgctcttcagaaacttagttctgggtcatataaaatt
ggatctaaaattattaagattgcttgggctttgaataaaggtgtgaaaactgaatacaaa
caattctgggatgtggatctgggagtttcctatattccatgggagaaggtgaaattagat
gatttagagggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagagtgg
gaaacagccagaagctcagaagctgctaaagaaaatactcaaacgacgcagagtgctaca
gttgataagagtaccgttatcacaacacagacagaagctttcacacaaccagtcactatg
ctgcagattccagtagctccagctgtgcctgctgttagcttggttccacctgcgtttcct
gtcacaatgtctgtccctcctcctggttatagcccaattcctcctccacccttcttgaga
gcaagtttcaacccttcacagccacctccaggttatatgcctcctccagttccacctgtt
gtcccaccacctgttgtcccaccacctgttgtcccaccagttgttccaacacctttagta
cagccaccattaccaattgcacaagagacgatgaaggatgttcctttcactggccttgtt
ctaccagttggcacagttactagcaatctagctactccaacattatcagctggaagtgtt
tttaatcccctaccaatcaacaaaccagaatcagatgacaaaggaccacatcttacagac
cttcagatttctgccagtgaaaacaatagatctgtgcaaagtgatgtctcgagtacctct
ggacttggaggagtgcagccatccagtgtctcaagcaattctgggcttactggagaaggg
ccaccatccactgtctcaagtagctctgggcttgcagggggagtacagccacccagtgtt
tcaagcagctctggaattgtaggaggagtgcaaccgccaacagtttccagcaattctggt
cttgcaggaggaatgcagctgcctgctgtctccagtagctcttctcttgctggcgggatt
cagccaactaacgcctcaagtagctctggacttatggctggagtgccaccaccaaatgcc
tcaagtagctcagggctcctagctggagttcatccacctggtgtctcaagcagccctggc
cttctgacaggaatgcagccacccagtgtttccagtagctcaggagttctggcaggagta
cagccacccagtgtttcaagcaactctgggcttctcataatgccaccacccaacgtttca
actagttctggacttatgggagtgccaccaccaaatatttcaagtaattctggacttctg
gcaatgcagcatccagctgcagttccaaacatgcctcatttaaatatcagtaatcagaga
atgccaggaatgcctcttatagatatccgtccaggcctaatgccccattcgcctggacca
aggtttccattgatgcagccaggaatgccaccacagcgtactattcctcctcccgcaatc
cttgatccatctcttcacccaccaccacctcgaggtccttttcctccaggagatattttt
aatcaaacagaaagaccttttggaacaccaggaagacaaaatattgataatatttctaat
ccagagaaaaggctaccacttggaggtgataacattcaacaggagggggacagagattat
cgctttcctccagtggaaaaccgagataatcttaacagaccatctccagtggatgtcaga
gattctgttggacgaccaccagttgatccaagagagggtataggaaggcctccagtagat
ggaagagaacactttgctagaccacatatagacatgagagaaaattttggaagaccaggt
atagataaccttggccgaagagagcattttggtttcaattcagacaagcactggggacag
agaggagattatgatgaaagagagcaccatgccttccctatttatggtggccctaaaggc
ttccatgaagacagagagaggtttcggcatgtaaactataggtttgatagtagaagtggt
cccagttggaatagaggatttgagcaggatgctcacagagattttgatgaccgcagaaga
ccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaattaat
ggaaacaggtttggaagagacagaatgtcaaacaactggatcccgcctccacatccacgg
gtttttgagtattttgatggggccacttctcaacgcaaagctgataatatgccccaggta
aatggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggatgatcca
gaactttatgaaaaactgacatcttctgtggagataaacaaagagaagagtgacacagaa
gctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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