Passer montanus (Eurasian tree sparrow): 120502326
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Entry
120502326 CDS
T07277
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120502326 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoa03019
]
120502326 (MTREX)
03041 Spliceosome [BR:
pmoa03041
]
120502326 (MTREX)
03009 Ribosome biogenesis [BR:
pmoa03009
]
120502326 (MTREX)
03016 Transfer RNA biogenesis [BR:
pmoa03016
]
120502326 (MTREX)
Enzymes [BR:
pmoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120502326 (MTREX)
Messenger RNA biogenesis [BR:
pmoa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120502326 (MTREX)
Spliceosome [BR:
pmoa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120502326 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
120502326 (MTREX)
Ribosome biogenesis [BR:
pmoa03009
]
Eukaryotic type
Pre-60S particles
Helicases
120502326 (MTREX)
Transfer RNA biogenesis [BR:
pmoa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120502326 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120502326
NCBI-ProteinID:
XP_039565564
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKSKTGAAEGARRPGKRLEEKPSVPAAIVKPKREAE
IDSTENVILGKKPKLEDALSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLKP
RTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNN
LEAQYNKIVIPNEENVVIYYRIRQQLAKLGKDIEEYIHKPKYCLPFLQPGRLVKVKNEGD
DYGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKDSLKNSATESAKPARPDERGEMQ
VVPVLVHLVSAISSVRLYIPKDLRPIDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLM
DVVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcgtttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcgccaagaagagtaaaacgggcgccgccgagggtgccaggaggccgggaaaa
cgattggaagaaaaaccttcagtaccagcagcaatagtcaagccaaaaagggaagctgag
attgatagtactgaaaatgtcattttgggaaaaaaaccaaaattggaagatgctttatca
gaagatgttaatctgacagatctgatgcctcaagtaaaggtgcagtctgtggaaactgtt
gaaggctgtacacatgaggttgcgcttccagcaaatgaggaattcacaggtctgaagcca
agaactggaaaagctgcaaaagaatatccatttattcttgatgccttccagagagaagct
attctttgtgtagataataaccagtctgtgctggtgtcagctcacacatcagctggtaaa
actgtttgtgctgagtacgcaattgccctagctttgagggaaaagcagcgtgtgatattt
acaagtccaattaaagctttgagtaatcagaagtaccgtgagatgtatgaagaattccag
gatgttggtttgatgactggggatgttaccattaatcctacggcttcttgtttggtaatg
acaactgagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtcgca
tgggttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaa
gagactattattttgcttcctgataatgtacattatgtgttcctttctgcaactattcca
aatgcccgtcagtttgctgaatggatctgccatcttcacaaacagccttgccatgtgatt
tacactgactatcgacctactccactgcagcattatatatttccagcaggaggagatgga
ctgcatttggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatg
caagtgcttagagatgccggagacttagcaaaaggggatcagaaaggcaggaaaggagga
acaaaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaa
cctgtgattatttttagcttcagtaagaaagactgtgaagcctatgcacttcagatgaca
aagttagatttcaatacagatgaagaaaaaaaaatggttgaagaagtcttcaataatgca
attgattgtctctcagatgaagacaaaaagcttcctcaggttgaacatgtgcttcccctt
ctgaagcgaggaattggtattcatcatggtggtttgcttcctatcttaaaagaaaccata
gaaattcttttctcagagggcctaataaaggccttatttgcaacagagacctttgctatg
ggaattaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatggaaaa
gatttccgatggatatcctcaggtgaatacattcaaatgtcaggtcgtgcaggacgccga
ggtatggatgacagaggaatagtaattcttatggttgatgaaaaaatgagtccaaccatt
ggcaagcagcttttgaagggttcagctgatcccttaaacagtgctttccacctgacatac
aacatggtattgaacttacttcgagtggaggaaatcaaccctgaatacatgttagaaaaa
tcattttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataat
ttggaagcacagtacaacaaaattgtaattcctaatgaagaaaatgtggtgatatactac
agaatccgccagcagcttgcaaaactgggtaaagatattgaagagtatattcacaaacca
aagtactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggtgat
gactacggatggggagtggttgttaatttctctaagaaatcaaatgttaagccaaattct
ggtgaattggacccattgtatgtagttgaagtgctcctgcgctgcagcaaagacagtttg
aaaaattctgctaccgagtctgcaaagccagccagacctgatgagagaggagagatgcag
gttgttcccgttttggtgcatcttgtctcagctatcagcagtgtccgactctacatacca
aaagacttgaggcctattgataacaggcaaagtgtgttaaaatctgtacaggaggtacag
aaacgttttcctgatggagtgcccttactagaccctattgatgacatgggcatcaaagac
caagggttgaaaaaagtaatccaaaaaatagaggcgtttgagcataggatgtattcgcat
cctcttcacaacgatccaaacttggaaaccatatacaaactctgtgaaaaaaaagcacag
attgctatggatattaaagtggcaaagcgagaattgaagaaagccaggactgtcctgcaa
atggatgaactcaaatgccgcaagcgtgttttgagaaggctggggtttgccacgtcttca
gatgttattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgaactactc
ctgacggaaatgatgttcaatgggctcttcaatgatttgtctgcagagcaggcaactgca
ctactcagctgtttcgtgtttcaagagaattccagtgaaatgccaaaattgactgaacag
ttggcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagca
gaggcaaaactggaaaccgatgaagaaaattacttgaattctttcagacccaacctaatg
gatgttgtgtatacatgggcaaatggagctaactttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgcatgaggcgtctagaagaactgcttcggcagatg
tgccaggctgcaaaagccattgggaacactgagctggaaaataagtttgcagaggggatt
acaaaaatcaagagagatattgtgtttgctgcaagcctttacctgtaa
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