Passer montanus (Eurasian tree sparrow): 120502875
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Entry
120502875 CDS
T07277
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120502875 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmoa04121
]
120502875 (TRIM54)
Ubiquitin system [BR:
pmoa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120502875 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
TRIM_CC
zf-RING_6
RHH_9
Sina_RING
CYP38_PsbQ-like
Zn_ribbon_FGT1_2
CoiA_N
DUF5799
Motif
Other DBs
NCBI-GeneID:
120502875
NCBI-ProteinID:
XP_039566762
LinkDB
All DBs
Position
Unknown
AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICHTIEENGRRQKQHLGLRFDALYGILEERKKELLQSIAAEQE
AKLQRVRGLIRQYGDHLEASSKLVESAIQAMEEPQMALYLQHSKELLKKITDMSKASMSS
RPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDEGDGAGEGSEAAADEDRLDSLEVP
EAAEDVGPRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtagggctgaagccgctcctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcgggcggttccggtgcccgtcc
tgccggcacgaggtggtgctggaccggcacggggtgtacggactgcagcggaacctgctc
gtggagaacatcatcgacatctacaagcaggagtcggcccgaccccttcatgccaaggct
gagcagcacctcatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgcgaggcgcccacctgctccctgtgcaaggtgttcggggcgcacaaggactgcgaggtg
gccccgctgccggccgtctaccagcgccagaagagcgagctcagcgatggcatcgccatg
ctggtggcggggaacgaccgcatccaggccatcatcacgcagatggaggagatctgccac
accatcgaggagaacgggcggcggcagaagcagcacctggggctgcggttcgacgcgctc
tacggcatcctggaggagcgcaagaaggagctgctgcagagcatcgcggccgagcaggag
gccaagctgcagcgcgtccgcgggctcatccgccagtacggagaccacctggaggcctcc
tccaaactggtggagtccgccatccaggccatggaggagccccagatggccctgtacctg
cagcactccaaggaactcctgaaaaagatcacagacatgtccaaggcatccatgagcagc
cgccctgagcccggctacgagaacatggaccacttctccatcaacgtggactacgtggct
gagatgctgaggactattgagttccagacagagccactgggcgaggatgagggggatgga
gctggggaaggcagcgaggccgcagcggacgaggaccggctggacagcctggaggtgccc
gaagctgctgaagatgtggggccgaggcagaagccagcgagctctccccatggtcagcac
tga
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