Passer montanus (Eurasian tree sparrow): 120506713
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Entry
120506713 CDS
T07277
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120506713 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmoa03021
]
120506713 (PCF11)
03019 Messenger RNA biogenesis [BR:
pmoa03019
]
120506713 (PCF11)
Transcription machinery [BR:
pmoa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120506713 (PCF11)
Messenger RNA biogenesis [BR:
pmoa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120506713 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
CID
Pcf11_C
zf_PCFS4
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
120506713
NCBI-ProteinID:
XP_039574581
LinkDB
All DBs
Position
Unknown
AA seq
1775 aa
AA seq
DB search
MPCFKEAFTPRLVSHADSSPVTKEWEVRGEGMATPGKCLASNFTSKKYLWANLMTEERQV
VLLFSRSPYCQLCPAAPGCADWEHWCQGWLLGGRAPQKHGGQRRRRGERVTESRDCRGWK
GALETTYPKTRTQVTQERVQAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVF
EKVDENTRKSLFKLRSTWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPK
FLNKSPEESNAPTSAVTSGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLEL
ELEQTKAQLAVSLSVQQGSSSIASVPAPSKQHVSPTPHMTVKPPHQTAVQSEKNKPSPSP
PLHDIKIVNRDPRLNRMGQHSSHTKDQSHRKEFSPSVTSQSETKGNKTAQAEKQNSTKSE
KSKASEKTQKKELEQSKAKSKSPSPLKNKLPDTKDSKNQECESSKASDISKRDPRLKRHL
QDKSEGKEEEVKEKRRSTEKKEKEEHKTSEHRPVGSRNKVINGAVQKQDTTTEESEKQGG
KQGRSSSRKRSRSRSPKARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQ
SHVEEGTQAARDERNSNKRNVKQEVRDPRRLKKAQEERPQETTTQHSAKASPDPKENAEN
WQGSKSGKRWKSGWEESKNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLS
VDANLQIPKELTSASKRELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVW
DSPTEEKCGLKKKPLLSDAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALL
SGIECEQAKAKRGVQFERKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRATKG
ARGSDPYDSWGESDEFRDALRQQGKSTAEFQKTDGDALCRFDNREERQLLGQAGVREEPR
SPFTERFKRARYEDPEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGV
DGQGSPFVDGPAAGSSSRIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGP
PGQLAGSLRFEGPPGQVGGGGPLRFEGPLGPLRFEGPAGQPVGGARFEGPGVGLRFEGPH
GQPTGGLRFEGPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPH
GQLGGGLRFEGPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPRGQPGLGPRLIDGPV
HQGAGGLRFDGPLGRAGPRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQA
RFETAIPQRFDGPHQPASRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQG
YNGPAHGMQFQRPDIFDGSPGPNFNGPAGPGAQSFPLRAAGHYFEEKGLQGPQYGNFSNM
PMGGSQVSLMSAQPYGQGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKT
GILKLSKTDSTSAQANEASSQPNAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLY
TGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIA
DLEERAKSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEE
EEWHLKNAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPSENPLNMMLDIVKQETEESC
DSPKIKEEPDDTPPACAEESTPASTEIKTEPEESV
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgccgtgttttaaggaagcgttcacccctcgcctggtttcacacgctgacagctctcca
gttaccaaggaatgggaagtgaggggggagggaatggctacacctggaaaatgccttgca
agcaacttcacttccaagaaatacctttgggcaaatctaatgaccgaggagaggcaggtt
gtgttacttttctctcgctccccgtactgccagctctgtcctgcggctcccggctgtgca
gactgggagcactggtgccaggggtggctgcttggagggagggcaccacagaaacacgga
gggcagcgccgccgccgaggcgagcgggtcacagagtcccgggactgtcggggctggaag
ggagctctggagaccacctatcccaaaacccgcacccaggtgacacaggaacgcgtccag
gctcctgcatcagagaagctacccgttatgtacctaatggattccattgtcaagaatgtg
ggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatttgtgtattt
gaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccacatgggatgat
atttttcctttgaagaaactatatgcacttgatgtcagagtcaactcattagatcctgcc
tggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtgaatcctaag
tttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcacttctggtgcc
tctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaactgataagg
cagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaactagagctg
gagctggaacagactaaagcacagttggctgtatctcttagtgttcagcagggatcatct
agtatagcttcagttccagcaccttccaagcaacacgtgtctcccacacctcatatgaca
gttaaaccacctcatcagactgctgtgcaatctgaaaaaaacaaaccatccccaagtcct
ccacttcatgatatcaaaatagtgaacagggatcctcggcttaataggatgggtcaacat
tcttctcatactaaagatcaatctcacaggaaggaattttcaccgagtgtgaccagtcag
tctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcaacaaagtcagaa
aaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaagcaaagtct
aaatcgccatcccctttgaaaaataagctgcctgatactaaagacagtaaaaaccaggaa
tgtgaaagtagtaaggcttctgacatcagtaagcgggatccaagactgaaaagacatctt
caagataagtcagaggggaaggaagaggaggtcaaagaaaagaggagaagtacagagaag
aaggaaaaagaggagcataagacaagtgaacatagaccagtggggagcagaaataaagtg
attaatggcgctgttcaaaaacaagacacaactacagaggagtcagaaaaacagggtggg
aaacaaggaagatcaagtagtagaaaacggtcacgatcacgctctcctaaggcaagatca
ccatctacacactctccaaaaagacgagagaggagatcacctaaaagaagacttcggagt
ttatctcctacttcatcaactcctaaaattggaaagatacgtcagataggccctaagcag
tctcatgttgaggaaggcacacaagcagcaagagatgaaagaaattctaataagagaaat
gttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaaagaccccaa
gagacaaccacccagcattctgcaaaagcatctccagatccaaaggagaatgcagaaaac
tggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagcaaaaactca
cagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacatcgggaaaac
tggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcagcatcggttaagt
gtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaagagaattactt
aagaaggctaatgaccgcttgacatctggtgaaataacacaagatgagtttctcatggta
gctcatcagatcagacagctgttccagtatcaggaaggaaagcacagatgtaatgtctgg
gatagccctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcggatgcagaa
ttaacatattatgaacataaagctaaactaaaaaggacacaagttcagcattcattgtca
aggctagatctgttggatcctgatgatattttggattatcatatacctgatgcattgctt
tctggaatagaatgtgagcaggcaaaagccaagcggggggtacagtttgagagaaaagag
ccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaagaccatttgct
gaaaacctgtcaccgcttgagagtcgacgaagacttgaagaccagcgtgctactaaagga
gcaagaggttctgatccatacgacagctggggagagtcggatgaatttagagatgctctc
agacaacaggggaaaagcacagcagagttccagaaaacagatggagatgcactctgcagg
tttgataatcgtgaagaaaggcagcttcttgggcaagctggtgttcgggaggagccaagg
tcaccattcactgaacgtttcaaaagagctaggtatgaagatccagagaaagcaccattt
ccagaaagtccagggtccagatttggaggtattgaagcaaagcagaggataagcgcactg
atggaagacagacctctgttcgatggctcacctagaccaactgctgcaagggttggggta
gatggacaaggcagtccttttgttgatggtcctgctgctggttcaagttccagaattgat
ggaccagctggacaggctgctatgagatttgaggggcctttggtggggacaggtgcgtct
cagtttgatggaccactggcaggagctgggggagctggagccctaagatttgatgggccc
ccagggcagctggcagggtccctgagatttgaaggacccccaggccaggttggtggagga
ggtccgctgcggtttgagggacctcttgggcctttgaggtttgaggggcctgcagggcaa
cctgtaggtggtgctagatttgaaggtcctggagttggtctcaggtttgagggtcctcat
ggtcagcctacaggtggtctcaggtttgagggacctcatggtcaacctatggggcctcgg
ggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttggggcctcat
ggtcaaccagggggtagcctcaggtttgaggggccacatttacagccgttggggccccat
ggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatggggccacat
gggccatcaggtggtgggctcaggtttgagggaccacatggaccatcgggtggtgggctg
agactggaaggaccacgtggtcagccaggtctaggtcctaggttgattgatggaccagta
caccagggagctggtggacttagatttgatggtcctcttggtcgggctggtccaagattt
gatggatgtcatggagctggatttgatggtcagcctggacagctgtctctcctgcaaaga
tttgatggaattcatggacagcctggtccaaggttggcacctggccaacaggcacaagca
agatttgaaacagccatacctcaaagatttgatggacctcaccagccagcctctaggttc
gacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccatcctgcctca
agactagaaatgtcaccatatggacaaggtggtccgtttgttgagcatcctggccagggc
tacaatggaccggctcatggaatgcagttccagagacctgatatatttgatggttcaccc
ggaccaaatttcaatgggccagctggcccaggagcacagagcttcccactgagagcagct
ggacattacttcgaagaaaaaggtctccagggtcctcaatacggaaatttcagtaatatg
ccaatgggaggtagtcaggtttctctcatgtctgctcaaccttatggccaaggtcagcag
tatttgccaaatcctggaagttttgtccagaaccctgcaggagccctttcccattcatat
cctgataaccaccttggacaggttgatgtgaatgaattgtttgctaaactgctgaaaaca
ggaatcctcaaattgtctaaaactgattccacatcagcacaagcaaatgaagcatcgtcc
cagccgaatgctgaagaagaagatgatgatcagaatgaagatcaaaatgttccagacctc
actaacttcatagtcgaagaacttagacagcgttatgatagtgttataaatcgactgtac
actggaattcagtgttactcctgtggaatgagattcactacttcacagacagatgtttat
gcagatcatttagattggcattatcgccagaaccggacggaaaaagatgttagcagaaaa
attacacacaggagatggtactacagtttaacagactggattgaatttgaagaaatagca
gatctagaggagcgtgctaaaagccagttctttgaaaaagctcatgaagaggttgtgttg
aagacacaggaagctgccaaagagaaggagttccagagtgtcccagcaggaccagctgga
gcagtggagagctgtgaaatttgccaagaacagtttgaacagtattgggacgaggaagag
gaagagtggcacttgaagaatgcaatcagggtagatgaaaagatttaccatccatcttgt
tatgaagattaccagaatacatcatcgtttgattgcacaccatctcccagcaagactcct
tcagaaaatccactaaatatgatgttggacattgttaaacaagaaacagaagagtcctgt
gactcacctaaaatcaaagaagaacctgatgacacccctcctgcctgtgcagaagagagc
acacctgcatctacagaaatcaaaacagaacctgaggagtctgtttaa
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integrated database retrieval system
