Passer montanus (Eurasian tree sparrow): 120508627
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Entry
120508627 CDS
T07277
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa04382
Cornified envelope formation
pmoa04510
Focal adhesion
pmoa04512
ECM-receptor interaction
pmoa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120508627 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120508627 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120508627 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120508627 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmoa04147
]
120508627 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
pmoa00536
]
120508627 (COL4A4)
Exosome [BR:
pmoa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120508627 (COL4A4)
Glycosaminoglycan binding proteins [BR:
pmoa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120508627 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120508627
NCBI-ProteinID:
XP_039578345
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLITAAWWLLIVFSTQRIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGDLGAQGPIGSLGPTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSVYILHFGKGLP
GERGDPGPPGMPGPRGSRGTMGPSGYPGHPGLPGVPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGSRGSRGPKGALGRGEKGEKGLPGF
PGLQGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPPLPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGPKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGPRGVQGPPGTPGRKGQMGYPGRHGEKGDPGLSGALGSPGLPGTPG
SAGQHGEKGEKGDPGRVRIKGLKGERGPTGLPGFPGQRGPDGRDGELGLPGEKGTQGDSG
VAIPGDKGFPGLPGPPGVKGQMGLPGLGLPGSPGARGSPGDFGDVGNVGPPGPKGQKGET
VCITSPYPGNPGPPGFKGVPGQKGLKGLPGYPGPNGFDGQKGHRGRPGAGIPGPEGFRGI
AGDPGDEGERGSTIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGNRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLPGPPGIKSLKGSLGSRGLPGPPGSRGPPGLPGNKGPIGFPGETG
SKGIQGPQGFPGLPGIQGPMGIFGVKGEEGKMGLPGPSGECGDMGIKGERGPPGDSGCVN
LRLEKGQRGDPGLPGEPGLRGERGEKGSTGFRGTRGFPGKDGVPGLPGDQGDTGVMGFPG
SRGLPGPKGLQGITGFQGEPGDQGDLGLPGNPGYPGLTGSKGCKGRRGDPTPLLGTPGQK
GPLGDPGLPGLCGFPGQKGLPGIQGQPGRPGSKGDRGYPGPPGLPGATGPPGLPGEPGEK
GKPGILGPPGLQGLPGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGPPGYSGEIG
PKGDRGEPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGLPGL
DGITGDPGNPGPPGETIFVRGDPGDSGIRGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
VHGPQGPPGALGEPGDQGFPGRPGPRGPTGFIGDPGEPGEVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGHPGPQGIKGEEGSYGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGVPGQPGPQIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLSEEQVQPYISRCAVC
EAPAQPVALHSQDQSIPPCPPSWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPVSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcacagctgcctggtgg
ctgctgattgttttttcaactcaaagaattgatgggggaggatatgcatatattgatcca
tgtgggggacaggattgttcagtctgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgacctgggagctcaaggtcccattgggtccttgggacctacaggaccagctggt
ctgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtttagatggtgttcctggcctc
ccaggaagggaaggacccagaggcaagcatggtttggatggctgcaatggctcgagggga
gacccaggatttccaggagaaaacggttatatgggaccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatattttacattttggaaaaggacttcca
ggagagagaggtgatcctggaccccctggcatgcccggacctagggggtcaagaggtaca
atgggcccatctggatacccaggccatccaggcttgcctggtgttccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gacattggactgcctgggccacctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatccagagggtca
cgtggacccaaaggcgcacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcagggtcatcctggttcttacggacctgcaggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagaaaaagggcccccaggtcctcctggagctgttggaactccaccgcttcctataaaa
ggtccacgaggagatcctggatttccaggtcctgttggtgaaatggggtcagttggacca
attggtccttcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggggaccctggtttgcctgga
acaggtgaattaatcccaggaagaccaggatttcctggaccaccaggcctaccaggacag
ccaggaagacaaggcttacctggactacccagtgtaatctgtactgacagagggatccct
ggagaacctggaccaaaaggtcagatcggccttccaggaagaaaaggggcaaaaggagag
aagggaagtcaaggcctctgctcatgcagtgctggtcctcctggtccccgtggtgtgcaa
ggacctccaggtactccaggaaggaaaggacaaatgggataccctggaagacacggagaa
aagggtgacccaggcttatccggtgcactgggatcaccagggctccctgggactcctggt
tctgctggacagcatggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggaccaactgggcttccaggatttccaggccaaagaggccct
gatggtagagatggggaactaggattgccaggggaaaaaggaactcagggcgattctgga
gtagcaattccgggtgataaaggattccctgggctcccaggacctcctggggtaaaaggc
cagatgggattgcctggcttggggcttcctggctctccaggagccagaggcagccctgga
gactttggtgatgtgggtaatgttgggccacctggtccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaaacccaggtcccccgggtttcaaaggtgttcca
ggacaaaagggtttaaaaggactccctgggtatcctggaccaaatggctttgatgggcaa
aaaggccatcgaggaaggccaggagcaggaatccctgggccagaaggcttccgaggcata
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggtccacctggcacagatggccagaaaggtcttccaggtgacaccacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccaggctttcctggctca
ccatgtgtcccaggcttaccaggaccacctggactcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagacaggggcctgcctgggccccct
ggaatcaaaagtctgaaaggctctctgggctcacgaggtctcccaggtcctccaggctca
cgaggtcccccaggacttccaggaaataaaggacccattggcttcccaggagaaacagga
agcaaaggcattcaaggaccccagggattcccaggactcccaggaatacaaggcccaatg
ggaatctttggtgtaaaaggagaagaaggaaaaatgggtctacctgggcccagtggagaa
tgtggagatatgggcataaaaggtgaaagggggcctccaggagacagcggctgcgttaac
ctccgtcttgagaagggacaaaggggggacccagggcttcctggggagcctggactgaga
ggtgaaagaggtgaaaaaggcagtactggtttcagaggcacacgaggatttccaggaaag
gatggtgttccaggactaccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaattacaggttttcaaggagaacca
ggtgaccagggtgatcttggcttaccaggaaaccctggatatccaggactgactggctcc
aaaggatgtaaaggcaggagaggtgacccaactcctctgcttggtacacccggtcagaaa
ggacctctgggagatccaggattgccaggactttgtggatttccagggcagaagggttta
ccaggtatccaaggacagcctggaagaccgggctccaagggtgaccgtggatatccaggg
ccacccgggttaccaggagctacaggtcctccaggattgccaggagaacctggagaaaaa
gggaaacctggaattctgggacctccaggattgcaagggttacctggatcccaaggcaga
aaaggtcttcctgggctgcctggactggatggcttggatggactaaaaggtcaaaagggt
tctgcaggagctccaggtcagagtgagacagggcccccaggatactcaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggcccccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacccaccggacctatg
ggaagatctcctgacagtgcctcacctggtcctccaggtgatcaaggattacctggttta
gatggcatcacaggtgatcctgggaatcctggtcctcctggagagactatctttgtgcga
ggagatccaggtgacagtggcattcgaggggcaccaggtaatcctgggccacgaggacag
cagggagccagaggccctccagggagccagggaagagaaggcccaaagggtcctatgggg
gtccatggcccacagggtccacctggtgctttaggagaaccaggagaccaaggttttcca
ggaaggcctggtcccagaggtcccacaggtttcataggtgaccctggtgaaccaggggaa
gtggatgattcgtgccctacaatcccagggcctcctggggaagcagggcaaagaggagaa
gatggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcatatggcctgccaggtcaagatgggttacctggggcacctggaccacca
ggtgaccaagggagccgaggagagcaaggatatgctgggccacaaggtccacctggccag
actggtgtcccaggacaaccaggcccccagattagatctgcaagtggattcttgcttgtc
cttcacagtcagtcagaccgagaaccactctgcccacaggggatgccaaagttatggact
ggctatagtctgctgtacctggaaggacaagaaaaagcccataatcaagatcttggtctg
gcaggctcctgcctgcccgtgtttagcaccatgccgtttgcctactgcaacatcaaccag
gtgtgctactacgccagccgcaacgacaagtcctactggctgtccagcgccgcgccgctg
cccacggcgccgctctccgaggagcaggtccagccctacatcagcaggtgcgccgtgtgc
gaggcgcccgcgcagcccgtggccctgcacagccaggaccagtccatccccccctgccca
cccagctggaggagcctttggataggatactcgtttttgatgcacactggatctggtgac
cagggtggtggacagtccctcatgtcacccggaagctgcctggaagacttcagatcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttcttcgctaatgaatacagc
ttctggctgaccaccgtgatgcctgagctgcagtttgcatcagcccccgtgtcagggact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctag
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integrated database retrieval system
