Passer montanus (Eurasian tree sparrow): 120508833
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Entry
120508833 CDS
T07277
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Pathway
pmoa04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
120508833 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmoa03400
]
120508833 (SPG11)
DNA repair and recombination proteins [BR:
pmoa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120508833 (SPG11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
120508833
NCBI-ProteinID:
XP_039578717
LinkDB
All DBs
Position
Unknown
AA seq
2373 aa
AA seq
DB search
MAAAGARPELRVLLVPRSGQPRDEARVRLSRARHALGALLPAGAIRLESLGPGGAARARG
SVLPGAWADFAWDSSEDDGSQSCKTKLLALAQSHDLFVYEFNVEDGKHNPNSLHSCEAET
LKKLLEAKNITLPSISSVKILSFGNNKCKLLLNQSVLVHLTFPGEGSPPETCGCFPLALP
PGAVGRIADSQFCRGILFLLDSAGWIYILDCCDGATLGKVAVALGAAPGPVSPLAALAVS
PDLSTAVVTSSCQRALAVQLNTYFRQFPEHLLCRRDPESLPVKPPEGLDEDELASSEHSM
ELLAAPFRTDRSWKAHLSSLWDRVRRRRTPGSPGLVHDLNLPWYQFLTHLEDHDPEVCED
PERMVAFVPRAVTWAASPALQGQPGGTGQQWAQIPVGAARELVKLECRLVTAAKAVFVLQ
AQDTGLSLALWDFESQHVTCSHFGRGSVYVESSAELPLCLLLTERGLSLVLFGVTQEEFL
TRLMMFGSAAVVDSLCHLNGWERCSIPIHALEAGLENRQLDTVDLFLKSKESGFSLSAGC
PGPEHPGGAASQSYLRNLEELRPALNLLCSAIQDNDMEPHSKPFSEQLLNLTLTFLTKQL
EEIFVHTEEPDEFLQKAADILTDYIIRLRKFLRRYPHPVVTPEHTGAELDEDLPEIEESQ
KWEKLTPEEVIAEAILSNKIPEAQIFFRRQQHPAESLQEFMQTALSLVYDCLLRGSPREA
SELLRNMGLDVKQELHKICLHTQDRRVRELLVKVLQEENYFSEKEKKIIDFVHQVERFYS
ESFQEKQETQSLSRCSRWRRQQELEGPRAVLGSQLGWGSPGAPRLTVTLSWALCWDPLLQ
EMLLLPWKPRQELKTCSAEVLWMHLTAQHDWLSICSWIEEAEPSQAPCDRAAWPPLSPDI
VDRSTLCSPYMRQDILNKLARKGIFVPSELEDFELLLQRLWCLGGVLQNPHPVPKYSTAS
GLDFHAQFVLHCLEHSLQYLLYTYLDYYSLTPSNCPVLDDKELQEAHPWFEFLVQCRGVA
SNPRDPKMVFQASLANAQMLIPSSQGGVSSILLEGRTLLALATTVYGPGGIDQVLQNEDT
EKPLKKVDPQLLKMALTPYPKLKAALFPPCTAHGILPPDISLYHLLQSLMPFDPTKLFGW
QSANTLAVSDAWSELPHFSSPGLVSRHGVQESLDFLFYLLHGRPAFAFGTFVGQQLARSK
APRQLIQQAAREAQLLALSCLGVPSVAAACVCFLELLGQDSLGLRVELRAASLLCSHGTC
RDSLVEKLTKLADGEKAAAAALLTSLEEAFWDAIEQQGIKRTSSDCRRQWSLVMQFCKLH
GLQLSTSFLRECARSNEWLQFLIQTQLHGHQPAQVLALLQEFPAVLQDHLQLALGRLLPA
EAGAAGRARAGSLFHTLLQCQGQPSPCWFLLAEGLRAHSPILSVLAACCPDANLISCLCV
WIITSVDGATRAEATAHTRAESPQWDLQDLAVIWKVFLRKKKSKTLLNGFQLFLKDSPLL
HILEMYELCMNCKKYNEAKTKLEKFQESLTNLGAAGGAAPEVPLPWLRSQALFLLELMLQ
QCHTDYELGRLLQLLAAAESLLLDGPHLRRLCALSEALRGSSISISRSILTCCSLEAFQR
ECSSILEQLQDKGMFSLAREVAALAQLPVDSVVTHEVLRDLQHLRDSGQWHQSQTRADFW
KKCNDTFSRHSICSRAAAAFFLQQADSAWDCCGPGTASSTLERQLLLTLAGHWLAQQPEV
PVQELQELEKQIWLCRVAERALLPAGSAPCPAALCFSRLAQQLSFARLPALEAAGQGGLA
QQLSCARLPAQEPALTAAERAALGALLGALLDQGGVHEAARVCHYFQLWQRDVALVLLCR
ALALGEAGLEQPEVRALLSEAGAAPAPSSLEDWTPLGGEDDAVVAALKALAEECVHGRGY
CRQVLCLYELSKELGCSFGEVAAREPREVLGAILARRGPERGRRAQAFIACQGLPPDTVA
PLLAQQITQELLASAQGRGQKQASNPAVESQELLQLAKLCQDHTLVGMKLLDKISSVPRG
ELSCITELLILAHSCFSLTCHMEGITRVLQAARLLTEEHLAPREEYGLLVRLLTGIGRYN
EMTYIFELLHQKHYFEVLMRKNLDPSGTLKAALLDYTKRCRPGDSEKHNMIALCFSMCRE
IGQNHEAAACTQLKLIDCRPWEESLQDVPNLKKLLLKAVTLFIDAAESYSKDSCVRQALR
CRRQTRLITLQLHFLGSGQSTRIINLGRQDLPGAILALPRFYQAAIVAEAYEFLPDWAEV
LFQQVITRGDFVYLEEFRQQRPLRPGLFEEVAKKVKQHPPADAALRNLKRFLTHCEDIYT
YYRLAYDHKFYDVVNSLLKDPQTGCCLNDLLAN
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccggggcccggccggagctgcgggtgctgctggtgccccgctcgggacag
ccgcgggacgaggcgcgggtgcggctcagcagagcccggcacgccctgggcgccctgctg
ccggccggcgccatccgcctggagtcgctggggccgggcggggccgcgcgggcccggggc
agcgtcctgccgggagcctgggccgacttcgcctgggacagctcagaagatgatggttca
caatcctgcaagacaaagctgctggctcttgctcaaagccatgacctgtttgtctatgaa
ttcaatgtagaagatggaaaacacaacccaaattctctgcacagttgtgaggcagagacg
cttaaaaagctccttgaagctaaaaacataactctgccttccatttcctctgtgaagatc
ctgtcttttggaaacaacaagtgcaaactgctgctcaaccagtctgtccttgtgcacctg
acctttcctggggaaggctcacccccagagacctgtggctgcttccccctggctctgcct
ccaggagctgtgggcagaattgcagactcccagttctgcagggggatcctgttcctgttg
gacagtgctggctggatttacatacttgactgctgtgatggagccaccctggggaaggtg
gctgtagccctgggagctgccccgggccctgtgtcccccctggctgccctggcagtgtcc
cctgacctcagcacagccgtggtgaccagcagctgccagcgtgccctggctgtgcagctc
aacacctacttcagacagttccctgaacatttgctctgtaggagagatcctgaaagtctc
ccagtgaagcctccagagggcctggacgaggatgagctggccagctctgagcacagcatg
gagctgctggcagcccctttccgcacagacaggtcctggaaggcacacctgtcctcactg
tgggacagagtgaggagaaggagaacaccaggctctccaggtttggtgcacgacttgaat
ttgccttggtatcagtttttgacccatcttgaagaccacgatcctgaagtctgtgaggat
ccagagaggatggtggcctttgtcccccgggctgtcacgtgggcagcttccccagccctg
caaggccagcctgggggtacaggacagcagtgggcacaaatccccgtgggagctgcccgg
gagctggtgaagctggagtgcagactggtgactgcagcgaaggctgtgtttgtgctgcag
gcacaggacacggggctgtctctggccctctgggattttgagtcccagcacgtgacgtgt
tcccactttggcagaggcagtgtctacgtggagagcagtgcagagctgcccctgtgtctg
ctgctgacagagcgtggtctgtccctggtcctgtttggggtcacccaggaggagttcctg
accaggctgatgatgtttggcagcgctgcagtcgtggattccctgtgtcacctcaacggg
tgggagaggtgctccattcccatccatgccctcgaggcaggtttggagaatcgccagctg
gacacggtggacctgtttttaaaaagcaaagaaagtggtttcagtctgtctgcaggctgc
cctgggcctgagcaccctgggggtgctgcctcccagtcctacctgagaaatttggaggag
ctcaggccagctctaaacttgctctgctcagcaatccaagacaatgacatggagcctcac
agcaagcccttctctgagcagctcctgaacctcaccctgactttcctcaccaagcagctg
gaggaaatctttgtgcacacagaggaacctgatgagttcctgcagaaggctgcagatatt
ttaactgattacatcatcagactgaggaagttcctgaggaggtaccctcacccagtggtg
accccagagcacacaggagctgagctggatgaggacctgcctgagatagaagagagccaa
aaatgggaaaaactgacaccagaggaggtcattgctgaggccatcctaagcaacaaaata
ccagaggcccagatcttcttcaggaggcagcagcatcctgctgagagcctgcaggagttc
atgcagacagctctgagcctggtctatgactgcctgctgaggggcagccccagggaggcc
tccgagctgctcaggaacatgggcttggacgtgaagcaggagctgcacaagatctgcctg
cacacacaggacaggcgcgtcagggagctcctggtgaaagtcttacaagaagaaaattat
ttttctgaaaaagagaagaaaattatagactttgtgcatcaggttgaaagattctactcg
gaatccttccaggaaaagcaagagactcagtctctttccaggtgcagccgctggaggagg
cagcaggagctggaggggccccgggcagtgctgggctcccagctgggctggggcagcccc
ggggccccccggctcacagtgaccctcagctgggctctctgctgggacccgctgctgcag
gagatgctgctgctgccctggaaaccacggcaagaactcaagacgtgcagtgctgaggtg
ctctggatgcacctgacagcccagcatgactggctgagcatttgttcctggattgaggag
gcagagcccagccaggctccgtgtgacagagctgcctggccccccctgagccctgacatc
gtggacaggagcactctgtgcagcccctacatgagacaggacatcctcaacaagctggcc
agaaaggggatttttgtcccttctgagctggaagattttgagctgctgctccagaggttg
tggtgcctggggggagtcctgcagaatcctcacccagttccaaagtacagcactgccagt
ggcctggacttccatgctcagtttgtcctccactgcctggagcacagcctgcagtacctg
ctgtacacctacctggactattacagtttaaccccttcaaactgccctgtcctggatgac
aaggagctgcaggaagcacacccctggtttgagttcctggtgcagtgcagaggggttgcc
agcaatccccgagatcccaagatggttttccaggccagtctggccaacgctcagatgctg
attcccagcagccaagggggtgtgagcagcatcctgctggagggcaggaccctgctggcc
ctggccaccacggtctatgggcctgggggcattgaccaggtccttcagaacgaagacaca
gaaaaacctctcaagaaagttgatccacagctcttgaagatggccttgaccccttacccc
aagctcaaggctgctctctttcccccctgcactgctcatgggattttgccccctgacatc
tctctctaccacctgctgcagtcattaatgccctttgatcccacgaaattgtttggctgg
cagtcagcaaacactcttgctgtgtcagatgcctggagcgagctgccccacttctccagc
ccggggctggtgagcaggcacggcgtgcaggagagcctggatttcctgttctacctgctg
cacggccgccccgccttcgccttcggcaccttcgtggggcagcagctggcccggagcaaa
gccccccggcagctgatccagcaggcagctcgggaggcccagctgctggccctgagctgc
ctgggggtcccctcggtggctgcagcctgcgtgtgcttcctggagctgctggggcaggac
agcctggggctgcgcgtggagctcagggctgccagcctgctctgcagccacggcacctgc
agggactccctggttgagaagctaacaaagctggctgatggtgaaaaggcagcagcagca
gcacttctgacctccttggaagaggccttctgggatgccattgagcagcagggcataaag
aggacgtccagtgactgcaggaggcagtggtccttggtcatgcagttctgcaagctgcat
ggcctgcagctgagcacgtccttcctgagggaatgtgccagatccaacgagtggctgcag
ttcctgatccagacccagctccacggccaccagccagcccaggtccttgccctgctgcag
gagttccctgccgtgctgcaggatcacctgcagctggccctgggcaggctgctgcctgct
gaggcgggtgctgctggcagggcccgtgcagggagcctgttccacacgctgctgcagtgc
cagggccagcccagcccctgctggttcctgctggctgaagggctccgggcacacagcccc
atcctcagcgtgctggcagcctgctgccccgacgccaacctcatctcctgcctctgtgtt
tggatcatcacttctgtggatggtgccaccagggctgaggccactgcccacacccgggca
gagagtccccagtgggacctgcaggaccttgctgtcatctggaaagtcttcttgaggaag
aagaagagtaaaacacttctgaatggcttccagctcttcttaaaggattcccctttgctg
cacatcctggagatgtatgagctgtgcatgaactgtaagaagtacaacgaagctaaaacc
aaactggagaaatttcaggaaagcctcacaaatctgggggctgcagggggagcagccccc
gaggtgccgctgccgtggctgcgctcgcaggcgctcttcctcctggagctgatgctgcag
cagtgccacactgactacgagctgggcaggctcctgcagctcctggctgcagcagagagc
ctgctgctggacggcccccacctgaggaggctctgtgccctcagtgaggccctgaggggc
tcctccatctccatcagccgctccatcctcacctgctgcagcctggaggccttccagagg
gagtgcagctccatcctggagcagctgcaggacaagggcatgttcagcctggctcgggag
gtggcagccctggctcagctgcccgtggacagcgtggtcacacacgaggttctgagggat
ctacaacatttaagagactctggacagtggcatcagagccagacacgagctgacttctgg
aagaagtgcaacgacaccttcagcagacattccatctgcagccgggccgcagcggcgttc
ttcctgcagcaggccgacagcgcctgggactgctgcgggccgggcacggcgagcagcacc
ctggagaggcagctgctgctcaccctggctggccactggctggcccagcagcccgaggtg
cccgtgcaggagctgcaggagctggaaaagcagatctggctgtgccgcgtggccgagcga
gcgctgctgcccgcgggctcggcgccgtgccccgcggccctgtgcttcagcaggctggcc
cagcagctgtccttcgccaggctgccagccctggaggcggccgggcagggcgggctggcc
cagcagctgtcctgtgccaggctgccagcccaggagccggcactgacggccgcggagcgc
gcggcgctgggcgcgctgctcggggccctgctggaccagggcggcgtgcacgaggctgcc
cgagtgtgccactacttccagctgtggcagcgggacgtggcgctggtgctgctgtgcaga
gccctggccttgggcgaggccgggctggagcagcccgaggtgcgggccctgctgagcgag
gccggcgcagcccccgccccatccagcctggaggactggacccctctggggggtgaggat
gatgctgtggtggcagcgctgaaggccctggcagaggaatgtgtccatggcaggggctac
tgcaggcaggtgctgtgcctctacgagctctccaaggaactgggctgctccttcggggag
gtggcggcgcgggagccgcgggaggtgctgggggccatcctggcgcggcggggccccgag
cgcggccgcagggcccaggccttcatcgcctgccaggggctgccccctgacaccgtggca
ccgctgctggcacagcagatcacccaggagctgctggcctcggcacagggaagagggcag
aagcaggcttcgaaccctgcagtggagagccaggagctgctgcagcttgccaagctgtgc
caggatcacaccttggttgggatgaagttgctggataaaatctcctctgtgccccgtggg
gagctgtcgtgcattacagagctgctgatcctggcccacagctgcttcagcctgacgtgc
cacatggaggggatcacacgagtgctgcaggcagctcggctgctcaccgaggagcacctg
gccccccgcgaggagtacgggctgctggtgcgcctgctgacgggcattggcaggtacaat
gagatgacctacatcttcgagctgctgcaccagaaacactacttcgaggtgctcatgagg
aagaacctggacccgagcgggacgctgaaggcggcgctgctggactacaccaagcgctgc
cggcccggcgacagcgagaagcacaacatgatcgcgctgtgcttcagcatgtgcagggag
atcggccagaaccacgaggctgccgcctgcacccagctcaaactcatcgactgccggccc
tgggaggagtctcttcaggatgttccaaatttaaagaagctgctgctgaaagctgtgact
ctcttcattgatgcagcagaaagttactccaaggactcgtgtgtgcggcaggcgctgcgc
tgccgccgccagacgcggctcatcacgctccagctgcacttcctgggctcgggccagagc
accaggatcatcaacctgggcaggcaggacctgccaggagccatcctggccttgccccgc
ttctaccaggcagccatcgtggccgaggcctacgagttcctgccggactgggctgaggtt
ctgttccagcaggtgatcaccaggggggactttgtgtacctggaggagttccggcagcag
cggccgctgcggcccggcctgttcgaggaggtggccaagaaggtcaaacagcacccgcct
gctgatgctgccctgaggaacctgaagcggttcctcacccactgtgaggacatctacacc
tactacaggctggcctacgaccacaagttctatgacgtggtgaactcgctgctgaaggac
cctcagactggctgctgcctcaacgacctcctagccaactga
DBGET
integrated database retrieval system
