Passer montanus (Eurasian tree sparrow): 120509336
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Entry
120509336 CDS
T07277
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
pmoa
Passer montanus (Eurasian tree sparrow)
Brite
KEGG Orthology (KO) [BR:
pmoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmoa03019
]
120509336 (HTT)
04131 Membrane trafficking [BR:
pmoa04131
]
120509336 (HTT)
03029 Mitochondrial biogenesis [BR:
pmoa03029
]
120509336 (HTT)
Messenger RNA biogenesis [BR:
pmoa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120509336 (HTT)
Membrane trafficking [BR:
pmoa04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
120509336 (HTT)
Mitochondrial biogenesis [BR:
pmoa03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
120509336 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
120509336
NCBI-ProteinID:
XP_039579756
LinkDB
All DBs
Position
Unknown
AA seq
3095 aa
AA seq
DB search
MATMEKLTKAFESLRSFQQQQGPAALPEEPLQRPKKELAATKKDRVNHCLTICENIVAQS
LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI
KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK
IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV
LLGLLVPVEDDRPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEISPSPEQL
IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTACGGIAQVSVSKDDPASR
SRSGSIVELIAGGGSSCSPVLARKHKGKVLLGEEEGLDDDSETRSDVSSASFAASVKGEI
TSELASSSGVSTAGSAGSAAADATGHDIITEQPRAQHTLQSDSVELAACDLTSTAAEGEE
DEVLSRSSSQISAVQSDATMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA
EGQYSGMQIGQLQDEEDEAANILQDDSSESFRNSSLALQQSHLLKTMSHSRQPSDSSVDR
FTPKEDAADAGDHENKPSRVKGDIGHYTDRDCAPLVHCVRLLSASFLLTGDKGALVPDRD
VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAMGEEYEEQYVSDVLNYIDHGDPQIR
GATAILCGTIVNSILIKSRFDVEKWLINVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKL
ACTAVRHCIMSLCSSSYSELGLQLIVDLLALKNSSYWLVRTELLETLAEVDFRLVNFLEG
KTESLHRGVHHYTGLLKLQERVLENVVISLLGDEDPRVRHVAAASLMRLVPKLFYNCDQG
QADPVVAVARDQSSVYLKLLMHETQPPSHFAVSTITRAYRGYNMLQSPTDVTMENNLSRV
IAAISHALTISTTRALTFGCCEALCLLSTTFPVCTWSVGWHCGVSQPSSSDEAQKGCTIG
MAGLVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSTEEDANQGAAKQEEP
WPALSDRALVTLVEQLFSHLLKVINICAHVMDDVAPGPAVKAALPSLTNPPSLSPIRRKG
KERESVEQASVPMSPKKSGEASPASRQTDATGPVPTSKSSSVGSFYHLPSYLKLYDVLKA
THANYKVTLDLQNTNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP
TMATVCVQQLLKTLFGTNLASQYDGLSSNPSKAQGKAQRLGSSNLRPGLYHYCFMAPYTH
FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTNISSAAKHRADKNAIHNHIRLF
EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG
QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI
VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR
LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS
VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNMSPPE
DRTEVKQVKYPPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI
HIFKSGMFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCHILLLVN
YTNYNWWSEVHQTPKRHSLSTTKLLSPHISGDSDESDLESKRGMCNREIVRRGALILFCD
YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAIHRNSAASGLFIQAIQSRCENL
AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAATL
QNSIAQLPVEELDRIQEYLQNSGLAARHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG
EDQPPLENVVLDKDWYVSLVRSQCYIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL
LAPCLSLGMNEISREQKSSLFETARRVTLDHVSAAVQNLPATHQVFQPLLPTEPSAYWKK
LSDIFGDEVMYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEGDILKFVVMSIEALSWHL
VHDQIPLSVDLQAGLDCCCLTLQQPSLWNLLSSAAHVTYACSLINCIRFIIEAVAVEPGN
QLLSPERKNTSKPLSEGEIDSNVQKTKHIIAACEMIAEMVECLQTVLSLGHKRNSSIPAF
LTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPSGDFGTVFPEIPVEFLQEKEIFK
EFIYRINTLGWISRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAIT
SLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRDN
IATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYKLGQVSIHSIWLGNN
ITPLREEEWGEDEEDENDVPAPSSPPISPINTRKHRAGVDIHSCSQFLLELYSQWILPSN
PSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILVQYLIPATC
KAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPIIS
EYLLSNLRGVAHCVNIHNQEHILVMCAAAFYLIENYPLDVGPEFSAGIIQMCGVMVSGSD
ESTPSIIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCMY
TGKEKISPSRVPDANPGAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDDF
FPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRT
PVAMAMWSLSCFFVSASTSQWISAILPHIISRMGKSEQVDVNIFCLVAIDFYRHQIDEEL
DRRAFQSVFEVVASPGTPYHRLLTCLQNVHKVTAC
NT seq
9288 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgacgaaggccttcgagtcgctgcgctccttccagcagcag
cagggccccgctgccctccccgaggagccgctgcagagaccaaagaaagaacttgcagct
accaagaaagatcgggtgaatcattgtctaacaatatgtgaaaacatagttgctcagtca
ctaaggaattccccagaatttcagaagctgctgggcattgctatggaactctttctcctc
tgcagtgaggatgcagaatctgatgtccggatggttgcagatgaatgccttaataaagtt
attaaagctttgatggattccaatcttcccaggttgcagttagaactgtataaagagatt
aaaaagaatggtgcttcaagaagtctgcgtgctgcactctggagatttgctgagcttgcc
catctagttcggcctcagaagtgcaggccatacctggtgaaccttttgccctgtctgaca
cggataagtaagagacctgaggaatccgtacaggagacgctggctgcagcaatacccaaa
atcatggcagcctttggcaattttgcaaatgacaatgagattaaggttttgttgaaggct
ttcatagctaatcttaaatccagttcccccacgatccgtcgaacagcagcaggatcagca
gtgagcatctgtcaacattcacgaagaacacagtatttctatgcctggttactgaatgtg
cttttaggcttgttggttcctgtagaagatgatcgtcctactcttttaattctgggtgtt
ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaagataccagcctg
aaaggcagttttggtgtaacaaggaaagaaacagagatttcaccttcaccagaacaactt
atacaggtttatgaactgactctgcactatacccagcatcaggaccacaatgttgtgact
ggagctttagagttgctccagcagctcttcagaactcccccccctgaactgctccatgcc
ctgaccgcctgcgggggcattgctcaggtcagtgtgtccaaagatgatcctgccagcagg
agccgcagtgggagcatcgtggaacttatagctggaggggggtcttcatgcagccctgtt
cttgcaagaaagcataaaggtaaagtacttcttggtgaagaagaaggcttagatgatgat
tctgaaacccgatctgatgtcagctctgcatcatttgcagcttctgtgaagggtgagata
accagcgagctggcctcttcatcaggtgtgtcgacagccggctcggcggggagcgcggcg
gccgatgccacgggacacgacatcatcacggagcagccccgtgcccagcacacgctgcag
tcagactccgtggagctggcagcctgtgacctgaccagcacagctgctgaaggggaggag
gacgaagtgctcagtcggagctccagccagatcagtgctgtccagtcagatgccactatg
gatttgaatgatggcacgcaggcttcctcgccaattagtgatagctctcagactactaca
gaaggtccagactctgctgtaaccccttcagacagttctgaaattgttttggagggtgct
gagggacagtattctggaatgcagattgggcagctgcaggatgaggaagatgaagctgca
aatattctccaagatgattcgtcagagtccttcagaaattcttcccttgctcttcagcag
tctcacctgctgaaaaccatgagccatagcaggcagccctctgacagcagcgtggatcga
tttacaccgaaagaagatgcagcagatgctggtgatcacgagaacaagccctccagggta
aagggggacattgggcactacactgacagagactgtgctcctctggtgcactgcgtcagg
ctgctgtcagcctccttcctgctcactggggacaaaggagctttagttcccgatagagat
gtgagagtcagtgtaaaagccttggcagtaagttgtgttggagcagctgttgcacttcac
cctgagtctttcttcagcaaactgtataaaacacctctggaggcaatgggagaagagtat
gaggagcagtatgtgtcggacgttctgaactatattgaccatggagatccccagattaga
ggagctactgccattctctgtggaacaattgtcaactccattctaattaaatcccgcttt
gatgtggaaaaatggctaataaatgtcagaagctcaacaggaaatctcttttccttgata
gactgcatacctctgttgcagaaaacactgaaagatgaatcctctgttacatgcaaactg
gcttgtacagctgtgaggcattgcatcatgagcttatgcagtagcagttacagtgagcta
ggtttgcaattgattgttgacctccttgctctgaagaacagctcatattggcttgtaagg
acagagcttctggaaacacttgcagaagtagattttcggctagtcaacttcttggaagga
aaaactgagagcttgcacagaggtgttcatcattatactggtctattaaagcttcaggag
agagtacttgaaaatgttgtaataagtctgcttggagatgaagatccaagagtgagacac
gtggctgcagcttcattaatgaggcttgttccaaagctgttttataactgtgatcaagga
caggctgacccagtggtggcagtagcacgagaccaaagcagtgtctacctgaaactcctc
atgcatgaaacacagcccccatctcactttgcagtgagcactatcaccagagcatacaga
ggttacaatatgctgcagagtccaacagatgtcactatggaaaacaacctttcaagggtt
attgcagcaatttcccatgcattgacaatatccactacaagagcacttacatttggctgc
tgtgaagctttgtgtcttctctccacaacatttccagtctgcacctggagtgtgggatgg
cactgtggtgtttcccagccaagttcttcagatgaagctcagaagggctgcaccattggc
atggctggcttggtcctgtctctcctttcatcagcatggttcccactggacctctcagca
catcaggatgctttgattttgactggaaacttgcttgcagcaagtgctcccaagtgctta
aagaatccctggagtactgaagaagatgcaaaccaaggtgctgcaaagcaggaggagccc
tggccagctctgtcagatcgagctctggtcactttagtagagcagctcttttctcatctg
ctgaaggtcattaatatttgtgcacatgtgatggatgatgttgctcctggtccagcagta
aaggcagcattaccttctctcacaaacccaccttctcttagtcctattcggagaaagggg
aaggagagggagtctgtggaacaggcatctgtgcccatgagccctaaaaagagtggtgaa
gcaagtccagcttctaggcaaactgatgctacaggacctgttccaacaagtaaatcatct
tcagtaggaagcttttatcatcttccatcatacctgaagttatatgatgtcttgaaagca
acccatgctaattataaggttactttggatctccagaacacaaatgagaagtttggatgt
ttcttacgctctgccttagatgttctctctcagatattggaacttgctactcttcaggac
attggaaagtgtgtagaagaaattttgggatatctaaaatcatgtttcaacagagagcca
acaatggcaacagtgtgtgtacagcagttattgaaaacattgtttgggacaaatctggct
tctcagtatgatggcttgtcttcaaaccccagcaaagctcaaggcaaagctcagcgcttg
ggctcctccaatctgaggcctggtctctaccactattgcttcatggcaccctacacacac
ttcacacaggcccttgctgatgccagtctgaggaacatggttcaggctgagcaggagcac
gatgcttcaggatggtttgatgtgctgcagaaagtttctacacagctgaaaactaacatt
tccagtgcagcaaaacatcgtgctgataagaatgctattcacaatcacattcgtttattt
gaaccccttgtcataaaagcattgaaacaatacacaacaacaacgtcggtacagctgcag
agacaagttctagacttgcttgctcaactggttcagctgcgagttaactactgtctcctg
gactcagatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga
cagttcagggagtctgaagcaattattcctaatatcttctttttcctggtgttgctgtct
tatgaacgatatcattccaaacaaataattggaattcccaagatcattcagctgtgtgat
ggtatcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatt
gttcatgatctctttgtgttaagaggaacaaataaagctgatgctggaaaagagctggaa
actcagaaggaggttgtagtgtcaatgctgctgagacttatccagtaccaccaggtgcta
gaaatgttcatcttggtattgcaacagtgtcataaagaaaatgaagacaaatggaagaga
ttgtctcggcaaatagctgacatcattctcccaatgcttgcaaaacagcagatgcatata
gactctcatgatgctttgggagtattgaacactttgtttgaaattttggccccttcatcc
cttcgccctgtggacatgcttttaaggagtatgtttgttactcctaaaacaatggcatca
gtgagcactgtccagctgtggatttctggaattttagctatccttagagttctgatttca
cagtcaacagaagacatcgttctatcccgtatacaagagctttccttctcaccatatttg
atttcatgtcaagcaatcaacagattgagatgtggagaaaataacatgtccccaccagag
gatcgcactgaggtcaaacaggtgaaatacccacctgaagagacattttccagattctta
ctacaactggttggcattctactggaagatattgtcaccaagcaattaaaagtggacatg
aatgagcagcaacacactttctactgccaggagctgggcacgctgcttatgtgcttaata
catatcttcaaatcagggatgtttagaagaatcacagctgcagccacccgactttttaca
ggagatggatctgatggtagtttctatacacttgagagtttgagtgaccttgttcagtcc
atgattcccactcatccttctttagttctcctctggtgtcacatcttgcttcttgtcaat
tataccaactacaactggtggtcagaagtgcatcaaaccccaaagcgacacagcctttct
actactaaattgcttagccctcatatatctggagacagtgatgaatccgacctggaatct
aagcgtggcatgtgcaatcgtgagatagtgagaagaggagcactcattctcttctgtgac
tatgtttgtcaaaatctacatgattcagaacacctgacctggctgattgtaaatcatgtt
caagacttgattaatctgtcccatgagcctccagtacaagattttatcagtgccattcac
aggaattcagcagccagtggtctcttcatccaggccattcagtcacgctgtgagaatctt
gcagctcccacaaccctgaagaagaccttgcagtgcttggagggaatccacctgagccag
tccggggccgtgctgaccctgtacgtggacaagctgctgtgcactcccttccgcgtgctg
gcccgcatggtggacaccctggcctgccgccgcgtggagatgctgctggcagccaccctg
cagaacagcattgctcagttaccagttgaagaactggatagaattcaggagtaccttcaa
aacagtggattagcagcaaggcaccaaagactctactcactcctggataggtttcgtctc
atggtagcaccagacacaaccagtccctcacctctggtcacctcacacccactagatgga
gaagaccaaccacctttagagaatgtagttctagacaaagactggtatgtgtcactagtg
cggtcacagtgttacatcaagtctgactcagcacttctagaaggagcagagctggtgaac
aggattcctcagcctgacctgaactccttcatgaccagcaaggaattcaacctgagcttg
ttagcaccctgtttaagccttggcatgaatgagatctcaagggagcagaagagcagcctc
tttgaaacagctcggagggtaactctggaccatgtgtctgctgctgtacaaaaccttcca
gccacccaccaggtttttcagccactattgccaactgagccatcagcctactggaaaaaa
ctaagcgatatctttggagatgaggtgatgtatcagtctatgatgacactttgtcgtgca
ctggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctcctgac
aaagagggtgatatcctgaaattcgtagtgatgtcaatagaggcactatcatggcattta
gtgcatgaccagattccattaagtgtagatcttcaagctggtctggattgttgctgtctg
acactacagcagcctagtctttggaatttgctgtcttctgcagctcatgtgacatatgct
tgctccttaattaactgcattagattcatcatagaagcagttgctgtggaacctggtaat
caacttctgagtcctgaaagaaagaatacttcaaaacctttaagtgagggggaaattgat
tcaaatgtacaaaaaacaaaacacattattgcagcatgtgaaatgatagctgagatggtg
gaatgcttacagactgtcttgtcactggggcacaaaagaaacagcagcatccctgcattt
ctcactcctgtcctcaagaacatcatcatcagtttagcaaggctgcctctagtgaacagc
tacaccagagtacctcccttggtctggaaattaggctggtcaccaaagccttcaggtgac
tttggcacagttttccctgaaattccagtagaatttctacaagaaaaggaaatctttaag
gagttcatctatcgtattaatacacttggatggatcagccgtactcagtttgaagagact
tgggctactttgcttggtgtgctcgtaactcagcccattgtcatggaccaggaggagaac
cagcaagaggaagatacagagaggacccaaatcaatgttctggcagtgcaagccataacc
tccctggtgctgagtgcaatgaccatacctgttgcaggcaatccagcagttagctgcctg
gagcagcagccccgcaacaaagctttaaaagctctggacacaaggtttgggaggaaacta
agtgttatcaggggaattgttgaacaggaaatccaggcaatggtgtctaagagagataat
attgctactcatcatttatatcaagcttgggaccctgttccatcactttcacctgctact
acaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaaata
ggagatatggattataaattgggacaggtctctatacactccatatggttaggaaataat
atcactccactgagagaagaagagtggggtgaggatgaagaagatgagaatgatgtaccc
gctccttcctcaccaccaatctctcctattaacaccaggaagcacagggctggtgtagat
atccattcttgttctcagttcttgcttgagctgtacagtcagtggatattgccatccaac
cccagcaagagaacaccagtgattttgatcagtgaagtggtgcgatcacttctggcagtg
tcagacttatttacagaaaggaatcagtttgagatgatgtatacaacactgacagagttg
agaaaggtgcatccatcagaagatgagattcttgtacagtatttgataccagctacttgt
aaagctgctgctgttcttggaatggataaagctgtggctgaaccagtaagtcgactgctg
gaatcaaccctaaggagcacccacatgccaagccggattggagctctgcatggaattctt
tatatccttgagtgtgacttgctggacgagacagcaaagcagctcattccaattatcagc
gagtatctgctctccaatttgagaggagtagcacattgtgtgaacatccataaccaagag
cacattttggtgatgtgtgcagctgctttctatttgattgagaattacccacttgatgta
gggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagtgat
gaatcaacaccatccattatttatcactgtgtcctgagagggttggaacgactcctcctt
tcagagcagctttccaggctggacagtgagtccctggttaaactgagtgttgacagggtg
aatgtgcagagcccccacagagcaatggcagccctgggattgatgctgacttgcatgtac
acaggaaaggaaaaaatcagccccagccgtgtcccagatgcaaatcctggtgctcctgac
agtgaatctgtgattgttgctatggaacgagtatctgtcctttttgataggatcaggaag
ggatttccttttgaagctcgagtagtggctcggattcttccacagttccttgatgatttt
ttccccccacaagatgtaatgaacaaagtcattggggaatttctgtccaatcagcagcca
tacccacaattcatggcaacagtagtttataaggtgttccagactctgcatagcactggg
cagtcctccatggtccgtgactgggtgatgctctctctctctaatttcacacaaagaaca
cccgtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcttccaccagtcaa
tggatttcagcaattcttccacatattatcagcagaatgggaaaatcagagcaagtggat
gttaacatcttctgtttggtggccatagacttctaccgacaccagatcgatgaagagttg
gaccggagagcgttccagtcggtgtttgaggtggtggcatctccaggaaccccataccat
cgcctactgacttgtttgcaaaatgtccacaaggtcacagcatgttga
DBGET
integrated database retrieval system
